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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAGgtttgtgaatttctttatttgatttggccattgttataattggtgtttaaaatcttgaaacctagggaaattgaaagatttcttacaaattacaatagtt...

Basic information

species Glycine max
transcript GLYMA08G45130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45130.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g05940.t01 (Vitis vinifera), 5'ss of exon 7
GTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAGgtttgtgaatttctttatttgatttggccattgttataattggtgtttaaaatcttgaaacctagggaaattgaaagatt--tcttacaaattacaa--tagtt--
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GTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAGgttgatt--ttcttttaattcttttagcc-ctcttatgatag---tttaccatattgatattatcgtgcttcaacattttaatgttttgactggcaaacttgttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302624|gb|FG996332.1|FG996332
EST:     CAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAG                         GGATTTTTGGCCTTCTATAAAG-TTTCCTTCCTAATTTTAGTCGAGTAG-A
genomic: CAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAGgtttgtgaat ... tgtattgcagGGATTTTTGGCCTTCTATAAAGGTTTCCTTCCTAATTTTAGTCGAGTAGGA