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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTTGTTTCAGAAGCCTGCATCTGCCTTCAGCTCAACAACATACCTTACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAGgtaaatttggttttcaactccccaccctccctaaaatcgaattccttagttgcttaaaataattatgttggcttaaatatgtttctggtccctataattt...

Basic information

species Glycine max
transcript GLYMA08G43200.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193578326|gb|FK534410.1|FK534410
EST:     GGAAGGCAAATCTTTCTCTTACCACAG                         TGTTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
genomic: GGAAGGCAAATCTTTCTCTTACCACAGgtaaatttgg ... ggtcaaacagTGTTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
EST: gi|10232809|gb|BE801697.1|BE801697
EST:     ACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAG                         TGTTATGC--AGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
genomic: ACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAGgtaaatttgg ... ggtcaaacagTGTTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
EST: gi|13312872|gb|BG406523.1|BG406523
EST:     ACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAG                         TGCTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
genomic: ACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAGgtaaatttgg ... ggtcaaacagTGTTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
EST: gi|151398332|gb|EV268203.1|EV268203
EST:     ACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAG                         TGTTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG
genomic: ACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAGgtaaatttgg ... ggtcaaacagTGTTATGCAGAGAAACAAGCCCTTGGAGAAGTGAGTGCCGAGCTTCTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATGTTGTTTCAGAAGCCTGCATCTGCCTTCAGCTCAACAACATACCTTACAATATACTTATTTCAGACTGTGGAAGGCAAATCTTTCTCTTACCACAGgtaaatttggttttcaactccccaccctccctaaaatcgaattccttagttgcttaaaataattatgttggcttaaatatgtttctggtccctataattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc