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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaattggtttattacaatatttgaattgttcataacattttttgggtcacagacttgattttgaacttaagggcagctgaagttgataggtgacttcag...

Basic information

species Glycine max
transcript GLYMA08G42380.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g11550.2 (Oryza sativa), 5'ss of exon 7
ATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaattggtttattacaata-------tttgaattgttcataacattttttgggtcacagacttgattttgaacttaagggcag--ctg--aagttgataggt---gacttcag-----------------------------------------------------------------------------
 || |||||     || | ||||   || | ||||| ||||||||  |  | ||||||||||| |  |||||||| |||||||||||||| |||||||||||| ||   || ||  |||        ||||  || ||| ||    || | ||||  |    |   ||||||| |  |         ||  || || | | |     | || ||                                                                             
GTTACAAACCGTGCAGCTATTGCGTTCTGTACCTTCGCTTGTTGATGTGAACGTTCCTGATGGAAGTCATTTTACGGTTTGTGGTGATGTGCATGGTCAGgtatttaaattttttgaatgcattgcttttgtttttttcctagtgcttct-gggtgtccccttcttttttgaaatggaaaatgatattggtaatttcacatgctaaaattttagctgtcatttgatttagtttattacatattgatatactgacagcctgattggaattgtaatatttttttccactgcag

upper sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G42810.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaattggtttattacaatatttgaattgttcataacattttttgggtcacagacttgattttga--acttaagggcagctgaagt-tgataggtgacttcag
 || || || ||  | || |||| |||  |||||||||||||||| |||  ||||||  ||||||||||| | |||||||| ||||| |||||||||||||||  || |||  |   |  |       |  ||||| |||||    ||| || |      |  ||  |   |    |  |||   | |  |   |   |  ||
CTTACAGACTAGGCAAATCTTGCTAGCACTGCCTTCTCTTGTTGATATAAGTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAGgta--tgctttggtttcacctactctccgaacataatatttta-atgtctcaaatgaatctgcgaggatccaccatctcctgttctcttgtttatatatgtag

upper sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S87_139V6.2 (Physcomitrella patens), 5'ss of exon 7
ATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaatt---ggtttattacaatatt--tgaattgttcataacattttttgggtcacagacttgattttgaacttaagggcagctgaagttgataggtgacttcag----
  |||||||  ||||||| |||  |||   |||| || | ||| |||||   ||||||||  |   |||||||||||||||||||||| ||||||| |||||| |      ||  ||  |       ||  ||||   |  | | | ||   |||  |||||| | ||  || | |   |     | |  |||    || || |     
CATGCAAACGCGAGAGATTTTGTTAGCAACGCCTACTTTGGTTCACATAACGGTTCCTGACAGAGGACATTTTACTGTTTGTGGTGATATTCATGGACAGgtactataaaattctttgtaggggcaatgctttgtattttccgtgtgttacttcat-gacttggtgtttgacatgatttctaactaggaggatgatggaattgacgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332390|gb|FK026055.1|FK026055
EST:     ATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAG                         TACTATGATCTTCTGAATATTTTTGAGCTTAATGCGCTTCCTTCAGAAGAG
genomic: ATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaattggtt ... tcttctgcagTACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAG
EST: gi|19268653|gb|BM884909.1|BM884909
EST:     ATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAG                         TACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAG
genomic: ATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaattggtt ... tcttctgcagTACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAG