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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTACAGTCTCATCTACCGGGTCCCTGAAGAAAACGGCGTAAAGGCTGCCTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttcttttcattattgggatatgtttattatgtctattttatatatatttttttagttttgcattaaacatatctgccaaaaccagaggcataac...

Basic information

species Glycine max
transcript GLYMA08G41630.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41630.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 7
AACTACAGTCTCATCTACCGGGTCCCTGAAGAAAACGGCGTAAAGGCTGCCTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct--tttcattattgggatatgtttattatgt-ctattttatatatatttttttagttttgcattaaacatatctgccaaaaccagaggcataac
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AATTACAGCCTTTTATACAGGCTTCCAGAGGAGAATGGGGTGAAGGCTGCCTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattccaatttcattat-gttccaacttcagtgtatattattggttctatgcagtctctcattaccatttgatatatgagttcaaag-agttttgcga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231875|gb|BE800763.1|BE800763
EST:     CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
genomic: CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
EST: gi|22524681|gb|BU083492.1|BU083492
EST:     CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGG
genomic: CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGG
EST: gi|31464900|gb|CD406928.1|CD406928
EST:     CTGTGATGAACTTGGGATTACCATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
genomic: CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
EST: gi|14205390|gb|BG839068.1|BG839068
EST:     CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
genomic: CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
EST: gi|7690984|gb|AW759119.1|AW759119
EST:     TTGGGANTTACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
genomic: TTGGGA-TTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
EST: gi|9259707|gb|BE347854.1|BE347854
EST:     CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
genomic: CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
EST: gi|22928755|gb|BU545894.1|BU545894
EST:     CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG
genomic: CTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct ... tcttaaacagGTGCTCTCACTGGAAAGTACACTCCTGATAAACCACCAAGTGGGCCCCGAG