1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGATAACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttgtactgaagtttgtatctgtttctaatttgattgaggttatatgtcattgtgatttctgtattttccattttgtttttactcag
species | Glycine max |
transcript | GLYMA08G41440.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGEST: gi|208093601|gb|GD893620.1|GD893620
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAAGAACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAEST: gi|193384330|gb|FK351792.1|FK351792
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCA-GA-CCCCAATTTCCTGGAGAATGAGAAGCGTTATGA
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGEST: gi|193350487|gb|FK317491.1|FK317491
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGEST: gi|193331807|gb|FK296291.1|FK296291
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGEST: gi|193627644|gb|FK576314.1|FK576314
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATTCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGEST: gi|193422593|gb|FK390192.1|FK390192
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGEST: gi|193463794|gb|FK427018.1|FK427018
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
EST: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTG ATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
genomic: AACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttg ... ttttactcagATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGATAACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCCGAGATTTCCCTTGgtacattttgtactgaagtttgtatctgtttctaatttgattgaggttatatgtcattgtgatttctgtattttccattttgtttttactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT