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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAGgtctgtttttttttttttattgatttacctataataacagttcctgtaacctttatttaatttgtttgaagtgattttacatatgtgaacacggattcac...

Basic information

species Glycine max
transcript GLYMA08G40530.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G326677_T01 (Zea mays), 5'ss of exon 6
ACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAGgtctgtttttttttttttattgatttaccta-taataacagttcctg--taacctttatttaatttg------tttgaagtg-------attttacatatgtgaacacggattcac---------
|| || ||| | ||||||||||| ||| |||| || ||||| || ||||| ||||||||||| || || | ||| || ||||| |||||||| |||||| ||||   || | |||  ||||| |   |    |  |  ||  ||  |||| |    ||| ||||      |||   |||       ||| | ||||| | |||   |||  ||         
ACAGCAAATCTTGATGGGGAAACAAATCTGAAAATAAGGAAGGCTTTGGAGAAAACTTGGGACTATGTAATTCCTGAAAAGGCTTCTGAGTTCAAAGgtttgttgccttctattttctgattaaggaagctgtgtctttttttgcttaacttcacattagtttgccctgtttttttgtgtcttggaattcttcatattt-aacttagataaacgatctacag

upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 5
ACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAGgtctgtttttttttttttat-tgatttacctataataacagttcctgtaacctttatttaatttgtttgaagtgattttacatatgtgaacacggattcac
||||| ||| ||||||| ||||| ||||||||||| || |||||||||||||| |||||||| ||| |||||||||| || || || || || |||||||||        || || |   |  ||  | || |||   |   |  | | ||| |  || || ||| |  ||        |   |  |   | |  | |
ACTGCAAATCTGGATGGTGAAACAAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGACTACTTGACTCCAGAAAAAGCCTCAGAATTCAAAGgtctgggcaaaacttattctgcaagctatgt-tactaaggatgttttgagcttttctagaacttatttaagatggaaaagttttcttatatctgaagcccc

upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ38622 (Selaginella moellendorffii), 5'ss of exon 7
ACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAGgtctgtttttttttttttattgatttacctataataacagttcctgtaacctttatttaatttgtttgaagtgattttacatatgtgaacacggattcac
||  ||||  | ||||| ||||| |||||||||||| | |||||| | |||||||| ||||||||| ||  ||| || |||||  | || |||| ||||     | |     | ||   |   | ||||  | |  |||  ||  |     |                                             
ACATCTAACCTTGATGGAGAAACTAATTTGAAGATTCGCAAAGCACTAGAAAAAACCTGGGATTACATGTATCCCGATAAGGCGCCAGACTTTAGAGgta---atctcgaactctagaaa---agctattctgagcgtt--tgcgatgcgcag--------------------------------------------

upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ31523 (Selaginella moellendorffii), 5'ss of exon 7
ACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAGgtctgtttttttttttttattgatttacctataataacagttcctgtaacctttatttaatttgtttgaagtgattttacatatgtgaacacggattcac
||  ||||  | ||||| ||||| |||||||||||| | |||||| | |||||||| ||||||||| ||  ||| || |||||  | || |||| ||||     | |     |  |   |   | ||||  | |  |||  ||  |     |                                             
ACATCTAACCTTGATGGAGAAACTAATTTGAAGATTCGCAAAGCACTAGAAAAAACCTGGGATTACATGTATCCCGATAAGGCGCCAGACTTTAGAGgta---atctcgaactccagaaa---agctattctgagcgtt--tgcgatgcgcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193493385|gb|FK460513.1|FK460513
EST:     AAGGCATCTGAGTTTAAAG                         GTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTTACTGGAA
genomic: AAGGCATCTGAGTTTAAAGgtctgttttt ... ctatgtgcagGTGAAATTGAATGTGAGCAACCAAACAATTCATTGTATACCTTTACTGGAA