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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgcagggtatattttatcatggtagcgatgcttttagctacatttcattgatattttcatgtcatctcatggtttttgtggtgtgaaaatcttgaaatacag

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgt---tgcagggtatattttatcatggtagcgatgcttttagctacatttcattgatattttcatgtcatctcatggtttttgtggtgtgaaaatcttgaaatacag
|||||||| || ||||| || ||||| |||||||| |||||||||||||| ||  ||||| ||||||| || || |  || || ||||| |||||    |     |    | | |||| |  |  |  |  |    |||   |  | ||  | ||  ||| ||   |  |    |||||  | |    |||    |         
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattctctatcattcttttat---aggtatgagttttcattggacaaaacgtgt---------

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgcagggtatattttatcatggtagcgatgcttttagctacatttcattg-atattttcatgtcatctc-atggtttttgtggtgtgaaaatcttgaaatacag
||||| ||||| || ||||||||||| || |||||||||||||||||||||||| |||||||||| || || || ||||| |||||||||||||||   || ||       |||  | || | ||   | ||||||| | |||  |   | | ||||| |  |  | |  |   |  |  |       || |  |  ||     
ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttccat------tttgcttatagcaggagttcttttagttccatccctgagcaaatttttacttagtttttactataatattttcacacaacttgtttaa-----

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgcagggtatattttatcatggtagcgatgcttttagctacatttcattg-atattttcatgtcatctc-atggtttttgtggtgtgaaaatcttgaaatacag
|| || ||||| || ||||||||||| || |||||||||||||||||||||||| |||||||||| || || || ||||| |||||||||||||||   || ||       |||  | || | ||   | ||||||| | |||  |   | | ||||| |  |  | |  |   |  |  |       || |  |  ||     
ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttccat------tttgcttatagcaggagttcttttagttccatccctgagcaaatttttacttagtttttactataatattttcacacaacttgtttaa-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402224|gb|EV272037.1|EV272037
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCT
EST: gi|209699627|gb|BW655719.1|BW655719
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|6134799|gb|AW133192.1|AW133192
EST:     CGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|209699197|gb|BW656186.1|BW656186
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|120529377|gb|EH257511.1|EH257511
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTACTTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|213588396|gb|DB967882.1|DB967882
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|9439993|gb|BE440504.1|BE440504
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|120530707|gb|EH258840.1|EH258840
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|209724195|gb|BW659729.1|BW659729
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|209715019|gb|BW650870.1|BW650870
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|14205774|gb|BG839452.1|BG839452
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|17518985|gb|BM188027.1|BM188027
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|209700117|gb|BW652975.1|BW652975
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|209715940|gb|BW650957.1|BW650957
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|209727383|gb|BW651931.1|BW651931
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|120533233|gb|EH261366.1|EH261366
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|22539787|gb|BU089630.1|BU089630
EST:     CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG                         ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgttgc ... tgaaatacagATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT