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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGACGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcctttgattttctccttctatatctgtcagataaatcccttacttccatccatgtatttcag

Basic information

species Glycine max
transcript GLYMA08G26180.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G26180.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 7
ATTGACGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcctttgattttctccttctatatctgtcagataaatcccttacttccatccatgtatttcag-----------------------------------------------------
||||| |||||||| |||||||||||||| || ||||||||||||||||||| | | |||||||||||| | |||||  |||||||||| || |     |         ||   ||   | ||||   |  ||||   |  |||    |   |    |                                                      
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9819566|gb|BE555079.1|BE555079
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
EST: gi|23734193|gb|BU765320.1|BU765320
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
EST: gi|193685389|gb|FK626605.1|FK626605
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
EST: gi|208265553|gb|GE063081.1|GE063081
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
EST: gi|209726301|gb|BW659614.1|BW659614
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTA-TTGTTATTGGACAACCGATTCCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
EST: gi|193644137|gb|FK592486.1|FK592486
EST:     GGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
genomic: GGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGT
EST: gi|17519479|gb|BM188521.1|BM188521
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTAT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tgtatttcagGGTACTGTGGCATACTAT