Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttctatattctctacagtcctcttcctcatggttacctgacatctttctatgatttgaacctgaacaaatcaatggttggcattacattttctttgttgttaaacag

Basic information

species Glycine max
transcript GLYMA08G23320.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttctatattctctacagtcctcttcctcatggttacctgacatctttctatgatttgaacctgaacaaatcaatggttggcattacattttctttgttgttaaacag
||| |||||  ||||||||||||| | |||||| || ||||| ||||||||||||||||| |  |||||  |||| ||  | ||| | ||  |||| ||||||  ||  | |  |||||    |  |||   ||| |||           | | | | |  ||||      |  || |||| |||| || | |                    
AGCTTTTGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATCGGTGTTCTTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgta--ttagtttcatctct----tgttctcgttcacggt--------gcttatatgtaaggtgaatt----cttatgaatgtttggtataatacag-----------------

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgta-gttttctatattctctacagtcctcttcctca--tggttacctgacatctttctatgatttgaacctgaacaaatcaatggttggcattacattttctttgttgttaaacag
||| ||||| || |||||||| ||||| || || |||||||||||||||||||| ||||||   ||||||||||| ||  ||||| | || ||||||||||||  |||  ||  || | |  | |     |  | |     | |  ||  || ||  |    |||  |     |||                                        
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgtttattatggcttttaagtctataaattggtattttggttctttttatataattacag---------------------------------------

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 7
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttctatattctctacagtcctcttcctcatggttacctgacatctttctatgatttgaacctgaacaaatcaatg--gttggcattacattttctttgttgttaaacag
||||||||||||||||||||||||||| || || || |||  |||||||||||| |||||    ||||||||| | ||  |||| ||||||||||||||||||  |   |||||  || | | |||   | |   ||| | |     ||  ||  ||| ||| |     | |   |  |||  ||    |    |  | || |            
AGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGgtatgtggatatatcttccatattcc--atgcatctggatgca-actattattgaatggttt-atttacatcgttttcatgcagtaaaaacagaaagtactgta-----------