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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTGGTGACCGGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacactttccatctattgatagctgtccatattttttgctcaatgaaaagggctggtagggcttgcatttgtgaatggaactatagatgcttctc...

Basic information

species Glycine max
transcript GLYMA08G22890.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G438673_T02 (Zea mays), 5'ss of exon 7
TTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTGGTGACCGGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacactttccatctattgatagctgtccatattttttgctca-atgaaaa-gggctggtagggcttg---catttgtgaatggaactatagatgcttctc
||| || || || || |||||    || || ||||||||||||||||| ||||| || || || ||||| |||||||| ||||| || || ||    ||||| ||    ||     |  |||  ||||  |   | || |   |    ||||| |   | |   |    |||   |||||        | | ||     | ||| 
TTACTCGTTTTCTGTGATTCCGACTATTGGAGAGCTGGTTGCTGGTGATCGGCAGTCGTACCAATACTTGGTTGAGAGCATCCGTCGGTTTCCAAATCAGgtaatggtgct----gtgaattagtagcacttt-tgttatcgacaagcatgaacatatgattacattctttgtggcattttctgccccacccatcatctcatctt

upper sequence: GLYMA08G22890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G065210_T03 (Zea mays), 5'ss of exon 7
TTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTGGTGACCGGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacactttccatctattgatagctgtccatattttttgctca-atgaaaa-gggctggtagggcttg---catttgtgaatggaactatagatgcttctc
||| || || ||  |  ||||    || || ||||||||||||||||| ||||| || || || ||||| |||||||| ||||| || || ||    ||||| ||    ||     |  |||  ||||  |   | || |   |    ||||| |   | |   |    |||   |||||   |    | | ||     | ||| 
TTACTCGTTTTCTATGGTTCCGGCTATTGGAGAGCTGGTTGCTGGTGATCGGCAGTCGTACCAATACTTGGTTGAGAGCATCCGTCGGTTTCCGAATCAGgtaatggtgct----gtgaattagtagcacttt-tgttatcgacaagcatgaacatatgattacattctttgtggcattttctatcccacccatcatctcatctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6964108|gb|AW432801.1|AW432801
EST:     GGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAG                         GAAAAATTTGCATCGATGATGGCGGATGCANGGTTC
genomic: GGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacac ... tggactgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTC
EST: gi|7458587|gb|AW666037.1|AW666037
EST:     GGCAATCCTATCAGTGCTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAG                         GGAGAAATATG-ATCGATGATTGCGGATGCAGGGTTC
genomic: GGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacac ... tggactgcagGAA-AAATTTGCATCGATGATTGCGGATGCAGGGTTC