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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATTGAACAGTTCGTGTATTGTATAAATAGTTACAGACAAGTTGCAATGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcatgtcaattttctttcccttgtttcttggaatggttgtgaataaatctgaaaccatttttctttctatgtgtttgtag

Basic information

species Glycine max
transcript GLYMA08G22100.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18038919|gb|BM307213.1|BM307213
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|58023875|gb|CX710616.1|CX710616
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|21888224|gb|BQ741428.1|BQ741428
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|151409143|gb|EV278951.1|EV278951
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACAAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|51335761|gb|CO979627.1|CO979627
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG