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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATTAGTCGTGCTTCCTATTTTCTTCATCATGGTGATACTTTGGGCTATAATGTTTTCTCAGTTCTGGAAACGTAAAAATTCGGCACTTTTAGCCAGgtaatgttatacttttttacttcttttgggatcagtgcaatcacttgacgcatttgcttgctgagattcttccctcttcacatctttttctctctcgtgttttggtgttgcag

Basic information

species Glycine max
transcript GLYMA08G20980.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G73020.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAAATTAGTCGTGCTTCCTATTTTCTTCATCATGGTGATACTTTGGGCTATAATGTTTTCTCAGTTCTGGAAACGTAAAAATTCGGCACTTTTAGCCAGgtaatgttatacttttttacttcttttgggatcagtgcaatcacttgacgcatttgcttgctgagattcttccctcttcacatctttttctctctcgtgttttggtgttgcag
|| | ||  | |  || || | ||||||  |       ||||| ||||||    |||||  |||||||||||||||||||||| ||||  | |||||||||||     | |||  |  |||  |       ||  |||||  | || |   ||||| || ||     | |||    |||   | ||| | ||  |  | | |   |       
TGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtagg---aaactcctacactgatgcataattc--tgcaacaattttag--atttgttttcta----ttttctgatttcttttttttgtgtcaattctctatcaatag-----

upper sequence: GLYMA08G20980.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 5'ss of exon 7
TGAAATTAGTCGTGCTTCCTATTTTCTTCATCATGGTGATACTTTGGGCTATAATGTTTTCTCAGTTCTGGAAACGTAAAAATTCGGCACTTTTAGCCAGgtaatgttatacttttttactt--cttttgggatcagtgcaatcacttgacgcatttgcttgctgagattcttccctcttcacatctttttctctct-cgtgttttggtgttgcag
   | | | |  |||||||||||||||| || |   | ||| | |||||| |||||||||  |||||||||||||| |||||  | || |||||||| ||||||| || || | |   |     ||||     | | |  |    |        |||| |   |   |||  |   |  |    | | |||   | |  ||||||||||| |||||
CACAGTCAATGATGCTTCCTATTTTCTTTATAAGCATAATATTATGGGCTGTAATGTTTTTCCAGTTCTGGAAACGCAAAAACGCTGCCCTTTTAGCAAGgtaatatt-tattatgaaaaccaactttctatgttattagacctgcccatttattttgttatatttaattagtttttaattctgtgtgtttgggtgtgtgtgttttggtggtgcag