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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggatgtgttctaccttttcattctcgttgcatttaacaccttatcacatatggccacctgatggagtcttcctatttttcag

Basic information

species Glycine max
transcript GLYMA08G20670.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20670.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02100.t01 (Vitis vinifera), 5'ss of exon 7
GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggat-gtgttctaccttttcattctcg----ttgcatttaacacctt---atcacatatggccacctgatggagtcttcctatttttcag-------------
||  ||||||| ||| ||||| ||||||||||||||||||| || ||  |||| || |||||||| || || ||||||||  | | ||| |    | ||  |  |  |  ||        ||  | || | || |    ||||  |  |      ||  ||| ||||  || |||                 
GTGGTTATAGGATCTGCAGATCTAAAAGCTAACCATGCAATTCGTCAGCATGTGGAGATTGTTTCCGAGAATCAGAAATACAACAGgtaaggccatattaaatgtgattgtttaaagattttaaactttatacttctacatcatgtgggattgggtgcaggactcttaataatttgtttcacataatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020488|gb|CX707230.1|CX707230
EST:     GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA                         ATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
genomic: GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggatgtg ... tatttttcagATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
EST: gi|58020876|gb|CX707618.1|CX707618
EST:     GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA                         ATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
genomic: GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggatgtg ... tatttttcagATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
EST: gi|58020680|gb|CX707422.1|CX707422
EST:     GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA                         ATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
genomic: GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggatgtg ... tatttttcagATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
EST: gi|15204508|gb|BI427276.1|BI427276
EST:     GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA                         ATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
genomic: GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggatgtg ... tatttttcagATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
EST: gi|15000832|gb|BI321646.1|BI321646
EST:     GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA                         ATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT
genomic: GCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAgtaggatgtg ... tatttttcagATTGGTAAAGTTGCTAGAAGACATCATGGATGGCAGCCGAATACTGATATT