1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTATCGTCGTGGAGGAGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttcaattgaacacacacacacacacgcacattaacaatttccttagtcaagtctactcagttatatataatctctgtag
species | Glycine max |
transcript | GLYMA08G18310.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCEST: gi|13252426|gb|BG363329.1|BG363329
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCEST: gi|14125941|gb|BG790379.1|BG790379
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCEST: gi|23063876|gb|BU578650.1|BU578650
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCEST: gi|192329329|gb|FK021811.1|FK021811
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCEST: gi|21256656|gb|BQ453544.1|BQ453544
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATCGTCGTGGAGGAGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttcaattgaacacacacacacacacgcacattaacaatttccttagtcaagtctactcagttatatataatctctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG