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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttagttttgaatcttcactgtcctaaatttacccattttcactttaagtgtttttaggagtcagggaataacaatcattttaagaattatttgttttctaatatatcag

Basic information

species Glycine max
transcript GLYMA08G17450.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 7
CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttagttttgaatctt--cactgtcctaaatttacccattttcactttaagtgtttttagg--agtcagg-gaata-acaatcattttaagaattatttgtttt-ctaatatatcag-------------------
|||||||| ||||| ||||||||||| ||||||||||||||  | |||||||| || || ||||| | |    | | |  |  |  || |||    |    |       | | |||  ||  || |     ||||  | ||  | | ||||   ||     ||  ||||  | || | ||  ||                    
CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATGATCACACGGAAGgtgtgtcagatctaggtttattgcattgtgactagacaatgggacataattttttgtaattctgtatcagtcttgtgagcagataatctggttggtggttgattgtcatgctcaaatgacatctttttacatttgtgtcag

upper sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S279_72V6.3 (Physcomitrella patens), 5'ss of exon 6
CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgt------atcttt--agttttgaatct--tcactgtcct------aaatttacccattttcactttaagtgtttttaggag--tcagggaataa--caat--cattttaagaattattt-----gttttctaatatatcag-----------------------------------------------
 | || |||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||      ||||||  |  ||  ||| |  | | || | |      | |||  ||     | ||     ||   |  || |   |||||  | ||  ||||    | |  || | | | |     || || | |  | | ||                                               
GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaatcttttcaaattataatttgatgattgccttgcatagagattagccagccgttacgaaccgttgctcgagaaagttcaggttacaattcaatgttgtgtgcaggagtgtgtaaagtgtgttttgaactttgagagtgacgagatctctgaaagcaagtgggtccatgagcttgactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278230|gb|BI942795.1|BI942795
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|193437007|gb|FK402944.1|FK402944
EST:     AGGTGCAATTTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGCGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: AGGTGCAA-TTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA