Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAgtgtgtttcttccctcaaaataatatcaactattatttgaaggatgaatatcatatctctaattcatcatgtataactgaataatgtttcatagtaaaagaatttataaaccatgcatgttattaatatttgcag
Basic information
species | Glycine max |
transcript | GLYMA08G17010.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G17010.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0127g00260.t01 (Vitis vinifera), 5'ss of exon 8
TCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAgtgtgtttcttccctcaaa-ataatatcaactattatttgaaggatgaatatcatatctctaattcatcatgtataactgaataatgtttcatagtaaaagaatttataaaccatgcatgttattaatatttgcag
|| | |||||||||||||| || ||||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||| || | | | | | | || || ||| | | | | | || ||| | ||| | | | || ||| | || ||
TCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattcccatttttagttgcacttttttctcttgttttagtagtataaactagat----gatttgataacactaatttatgtgttttcacctctaacatggctttgctttcacag-------------------
upper sequence: GLYMA08G17010.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S63_54V6.2 (Physcomitrella patens), 5'ss of exon 8
TCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAgtgtgtttcttccctcaaaataatatcaactattatttgaaggatgaatatcatatctctaattcatcatgtataactgaataatgtttcatagtaaaagaatttataaaccatgcatgttattaatatttgcag
| |||||||||| || || || | |||||| ||| ||| |||||||| | |||||||| |||||||||||| ||| ||||||||| |||||| ||| || || || | | || ||| ||| | |||| | ||| | | ||| | || || || | || || ||| | ||
TGCTGGAGATGAACCCATTTACACTCGTCAATAACGTCCCTCTTCCATTGGACATGCGTGGCGAGCTGGATGATACTGCTCTTTTTAAGAACTTCCAGAAgtacgttctgattcttgaattactgtgaaatatc----------tgacatttgtatcaatg-ttcgtagagcatacc--aacgat-ttgcttacaaacgtgattcttcgctcac---------------------
upper sequence: GLYMA08G17010.2 (Glycine max), 5'ss of exon 7
lower sequence: EFJ27687 (Selaginella moellendorffii), 5'ss of exon 6
TCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAgtgtgtttcttccctcaaaataatatcaactattatttgaaggatgaatatcatatctctaattcatcatgtataactgaataatgtttcatagtaaaagaatttataaaccatgcatgttattaatatttgcag
| | ||||||||||| ||||||||||| ||||| | || ||||||||||||||| | || ||| | ||||| || ||| ||||| |||||| |||||| | | | | |||| || | ||| || ||||
TGATCGAGATGAATCCCTTCACTTTGGTGAATGGCGAACCGTATCCTCTGGACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgccacatcttttgctatat--gctgacacttgt------gatgtcatgcag-----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192294349|gb|FG987278.1|FG987278EST: GACATGAGAG-CGAGCTTGATGATACTGCTGCTTTCAAGA-CTTCAAGAA ATGGGGAAACATTGA-TTTCCA
genomic: GACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAgtgtgtttct ... atatttgcagATGGGGAAACATTGAATTTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAgtgtgtttcttccctcaaaataatatcaactattatttgaaggatgaatatcatatctctaattcatcatgtataactgaataatgtttcatagtaaaagaatttataaaccatgcatgttattaatatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC