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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttcttggcttactgctgttattattcatggattaaagcctattgctattcacagacaatagtagacatactgtatgtctggaaagatgttcttg...

Basic information

species Glycine max
transcript GLYMA08G16870.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 8
TACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttcttggcttactgctgttattattcatggattaaagcctattgctattcacagacaatagtagaca--tactgtatgtctggaaagatgttcttg
|||||||||||||||||| |||| ||   ||||||||| |||||||||| | | ||||  |||| ||| |||||||| ||||  ||        ||  |  | |||| |||   |  |   ||   |||  |    |  ||     | |   |  |||  |     || |            
TACCGCTGGATTGCATATTTGTCGATCGCTATTGGATGCTGCTTTGTGGCCATTTTTCTCCTTGGAACAAAAGAGCCAAGgtcagcag--aaaattcttaatcttatcatttcagtttctgaggagatttttggatat-gatggctgcaattaattaccttcctcttgcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274169|gb|BF324537.1|BF324537
EST:     ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG                         ATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
genomic: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttct ... ttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
EST: gi|6667043|gb|AW278502.1|AW278502
EST:     ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG                         ATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
genomic: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttct ... ttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG                         ATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
genomic: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttct ... ttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA