Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTCCTGGTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattgcttacttaataatgcatatatataatccttgtacaaaggtgttttaatatctacactctgtttagattttgttgtataatctttgattcatacacttggtcacag

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 7
GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTCCTGGTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattgcttacttaataatgcatatatataatccttgtacaaaggtgttttaatatctacac-tctgtttagattttgttgtataatctttgattcatacacttggtcacag
|||  | || ||||| || |||||||||  ||| ||    ||  ||   | |||||||||||||||||||| | |||| |||||||| ||||| |||||||| ||   |  ||||    ||     ||    |  | |  |||  | |    | |||| |  ||     || ||       | | |  |||   | |||  ||    | |||||                                          
GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCGACAGCAGTTAAAGATGGGGAGCCTTTGCCTGAGGGTCTACTTTGGCTTCTTTTGACCGGAAAGgtttg-gcttcttttgtttaactgttttt--cttgtaaacttggttttcctgttcttatttttgtcggcatttagc-----tgctagtgtggactgataggtatttgtttgtttcag---------------------------------------

upper sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 7
GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTCCTGGTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattgcttacttaataatgcatatatataatccttgtacaaaggtgttttaatatctacactctgtttagattttgttgtataatctttgattcatacacttggtcacag
||| ||||| || ||||||||||| |||    | |||  |||    |||||||| |||||| ||||||||| | | || |||||||| ||||||||||||||  |   | || ||| |||  ||||    ||||     |    |  |   | | | || |  | |   | | | | | ||| || | |    ||  | | |    | |                                              
GGGTATGTCTATCCCTGAATGCCAAAAAGTATTACCAAATGCAACACCTGGTGGAGAGCCTCTGCCTGAGGGTCTGCTTTGGCTTCTTTTGACAGGAAAGgtgggt--ttgtgttaaaaa--caaaagacattacaggat----acctgaatgaatgaaaataggaggaagacattgcatgt-catatgaaaattggtttatgaggttt----------------------------------------------

upper sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S37_33V6.2 (Physcomitrella patens), 5'ss of exon 6
GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTCCTGGTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattgcttacttaataatgcatatatataatccttgtacaaaggtgttttaatatctacac-tctgtttagattttgttgtataatctttgattcatacacttggtcacag
 |||||||||||||||||||| ||||||||||||||||  ||| | |||||||| || ||  | || || |   |  ||||||| || | ||| ||| |||||    |      |   ||||||  ||    |    | ||||     ||  | ||| |   ||  | ||     | || |  |||  ||     | | ||| ||   | | ||| | ||||| || |       |                    
AGGCATGTCAATTCCTGAATGTCAGAAAAAGCTTCCAGCAGCTATACCTGGTGGTGAACCGATCCCCGAAGGCTTTTTGTGGCTCCTTTCGACTGGAGAGgtac-tgacgtcacttccaaatcagtttagggtcg--aatttg-----tgggttcttgagggtgttttta---ggtgctggatcaagcgtaa---agtgtctgcaggcccgattaaaatttgt-gtgttcatgcag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593279|gb|DB966104.1|DB966104
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
EST: gi|14206066|gb|BG839744.1|BG839744
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAAATTGCGAA
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAA-TTGCGAA
EST: gi|13562412|gb|BG550632.1|BG550632
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
EST: gi|209725513|gb|BW677810.1|BW677810
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT