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ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttttttttttcctttttcttttttgccttttctgttattgtgagattctgttatatgatattgtgtttttctgcatattgtcttttacatgtag
species | Glycine max |
transcript | GLYMA08G15340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGEST: gi|308097990|gb|HO761161.1|HO761161
genomic: CCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATG
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAAGATGTTGGTEST: gi|308098358|gb|HO760099.1|HO760099
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGT
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTEST: gi|308098130|gb|HO761301.1|HO761301
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGT
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTEST: gi|9903102|gb|BE612070.1|BE612070
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGT
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGEST: gi|192296110|gb|FG989470.1|FG989470
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATG
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAG-AAAATATGTTGGGTACTTGGTTCTAGCGCCCTATGATCCAATEST: gi|7640049|gb|AW734358.1|AW734358
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGG-TACTTGGTTCTAGCGCCCTATGATCCAAT
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGEST: gi|151409280|gb|EV279088.1|EV279088
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATG
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGEST: gi|19054166|gb|BM732833.1|BM732833
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATG
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA GEST: gi|19054166|gb|BM732833.1|BM732833
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtag-
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA GEST: gi|19054166|gb|BM732833.1|BM732833
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtag-
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA GEST: gi|26057523|gb|CA800437.1|CA800437
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtag-
EST: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA ATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATG
genomic: CAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttt ... ttacatgtagATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttttttttttcctttttcttttttgccttttctgttattgtgagattctgttatatgatattgtgtttttctgcatattgtcttttacatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA