1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGGGAAGGGGCCTAATGGTAGGCATAGAGTTGGTCACTGACCGAGACAACAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaaggaaccattttattttatgcatccgaagccttcttttccaaaaataacttccaaaccgtctaacgaattatttgtatattcattgaag
species | Glycine max |
transcript | GLYMA08G14850.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGAEST: gi|58017612|gb|CX704354.1|CX704354
genomic: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
EST: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGAEST: gi|208074586|gb|GD872479.1|GD872479
genomic: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
EST: AAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGAEST: gi|208203048|gb|GD997480.1|GD997480
genomic: AAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
EST: AAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGAEST: gi|58024685|gb|CX711426.1|CX711426
genomic: AAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
EST: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGAEST: gi|16349066|gb|BI974661.1|BI974661
genomic: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
EST: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGAEST: gi|209707420|gb|BW670659.1|BW670659
genomic: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
EST: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAG AGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
genomic: CAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaag ... ttcattgaagAGCTTGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGGAAGGGGCCTAATGGTAGGCATAGAGTTGGTCACTGACCGAGACAACAAGACACCCGCAAAGGCTGAAACTGCTGTCGTGTTTGAAAAACTCAGAGgttagacaaggaaccattttattttatgcatccgaagccttcttttccaaaaataacttccaaaccgtctaacgaattatttgtatattcattgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG