1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaatggccttatctgcagctactgactagatgatatctttttcctttctttggtgtgttctataatttattcaacccctcctccccgcccaaaa...
species | Glycine max |
transcript | GLYMA08G14780.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|192331294|gb|FK021005.1|FK021005
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|57574219|gb|CX547194.1|CX547194
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|192320791|gb|FK013881.1|FK013881
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|192320790|gb|FK013880.1|FK013880
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: TCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|58022603|gb|CX709344.1|CX709344
genomic: TCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|192331184|gb|FK020951.1|FK020951
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|192327943|gb|FK022474.1|FK022474
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAAEST: gi|58018279|gb|CX705021.1|CX705021
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|192331185|gb|FK020952.1|FK020952
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCAEST: gi|298194036|gb|HO040684.1|HO040684
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCA
EST: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATG TGGGGAAGAAA
genomic: CCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaat ... gatcttgcagTGGGGAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaatggccttatctgcagctactgactagatgatatctttttcctttctttggtgtgttctataatttattcaacccctcctccccgcccaaaa
- - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccca