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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttttattggccactttcgtaagccttaccctatacaagtatacatcatacatttttttatttccttttgctacatcctccatgacatc...

Basic information

species Glycine max
transcript GLYMA08G14720.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14720.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g65090.2 (Oryza sativa), 5'ss of exon 7
GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttttattggccacttt---cgta-agccttaccctatacaagtatac-atcatacattttttta----tttccttttgctacatcctccatgacatc-------------------------------------------------------------------------------------------
|| ||||||||||| || ||||| ||||||||  |||| |  |||||||||||||||||||| ||||||||||||||||| |||||     || | || |    || ||| |    ||  ||  ||     ||  |   ||   ||  | |||| |  ||    | ||  |||| || || ||  |  || ||                                                                                           
GCTTTTGCAATGACGGGCTGGCGACTTGGATACCTTGCAGCCCCAAAACATTTTGTTGCAGCCTGTGGAAAGATCCAAAGCCAGgtg-atcacttcttgttcatgcaactataaatgtgtagtgttgagtgatgtagtcatgtgatactgcattatcatagaactatcactttgtta-attctagaaaacttcacgtgccgcaacattatctgttctagcccccttttccttctgcaaactctgatttgcagttgtcctcacaccaacgctttgtttgctgcag

upper sequence: GLYMA08G14720.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G400604_T01 (Zea mays), 5'ss of exon 7
GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttttattggccactttcgtaagccttaccctatacaagtatacatcatacatttttttatttccttttgctacatcctccatgacatc---
|| ||||||||||| |||||||| ||||| ||  |||| |  || ||||||||||||||||||||||||||||||||||| |||||       |||  ||    |    |||| | | |  ||   | |  |||  ||  | ||    |  |  | |||   |      |   |   | | |||   
GCTTTTGCAATGACGGGTTGGCGTCTTGGTTACCTTGCAGCCCCTAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGCCAGgtgaaacg-attcatttccagtg--tttctttatctctaatatgttaaaggttaagtgatgtggtactgcacttctagtaaaactaatatttgtaagatcgtc

upper sequence: GLYMA08G14720.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G033799_T02 (Zea mays), 5'ss of exon 7
GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttttattggccactttcgtaagccttaccctatacaagtat-acatcatacatttttttatttccttttgctacatcctccatgacatc-
|| ||||| |||||||||||| | ||||||||  | ||||  || ||||||||||| || || ||||||||||||||||| |||||  | |||   ||  |   |  |      |||   ||| |  ||   | | | ||    |   |     || || |  |||| |     |   | |  |  
GCTTTTGCTATGACTGGTTGGAGACTTGGATACTTAGCTGCCCCTAAACATTTTGTCGCGGCCTGTGGAAAGATCCAAAGCCAGgtggg-tactcgttaaaaatgatatgcatttaaatattagctgattttattcttactctctttgtccacatacttacaattgc-aggctataactaattttt

upper sequence: GLYMA08G14720.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G22250.2 (Arabidopsis thaliana), 5'ss of exon 7
GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttttattggccactttcgtaagccttaccctatacaagtatacatcatacatttttttatttccttttgctacatcctccatgacatc
|| || |||||||| |||||| ||||||||||| |||||||||| |||||| |||| ||||| ||  | ||  | ||| | ||||||| ||| || |   |       || ||  || | ||| |  | | | | |   |||||    |     | |   || || |   |  |  | |     
GCTTTCGCAATGACGGGTTGGAGGCTTGGATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTACAAGGCCAGgtat-ctagatataa-acatatttctctctaaatctttatcgaaaaaatgcagcgatcatgagat---gaaatcggttctggtttttgttttaag-----

upper sequence: GLYMA08G14720.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g04860.t01 (Vitis vinifera), 5'ss of exon 7
GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttttattggccactttcgtaagccttaccctatacaagtatacatcatacatttttttatttccttttgctac-atcctccatgacatc
 | |||||||||||||||||||| ||||||||  | |||||||||||||| ||||| |||||||||||||| || || || ||||||    |   | |  |    | |           |     | | |     | |    ||| ||   |  ||        ||    ||   ||| |  || 
ACTTTTGCAATGACTGGTTGGCGACTTGGATACCTAGCTGGTCCAAAACACTTTGTGGCAGCATGTGGAAAAATTCAGAGCCAGgta-atcatcatctccacctactaaaccaaattctccccttccacattgagaaaatgaataaataaataaatgctgcaaggcagttattacccaagtaatg

upper sequence: GLYMA08G14720.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g00980.t01 (Vitis vinifera), 5'ss of exon 7
GCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctacattttt----tattggccactttcgtaagcctta-ccctatacaagtatacatcatacatttttttatttccttttgctacatcctccatgacatc
||||| ||||||||||| ||||||||||| ||| |||||||||| ||||| |||||||| |||||||||||||| || ||||||||||  ||||| | |     |     |||||||  | |    | | |||| || | || |||| |   |   |   |      |  |  ||    | |||     
GCCTTCGCAATGACTGGCTGGCGGCTTGGGTATCTTGCTGGTCCTAAACACTTTGTTGCTGCATGTGGAAAGATTCAGAGTCAGgtatattacatctataccacacctatcactttccaatgggaaagctctattca-gcatgcatcttgtgtccctcattaaggcatcacgtcacaagcgatgc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23053844|gb|BU577598.1|BU577598
EST:     TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAG                         TTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
genomic: TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctaca ... ttgaatttagTTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
EST: gi|19934521|gb|BQ079551.1|BQ079551
EST:     TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAG                         TTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
genomic: TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctaca ... ttgaatttagTTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
EST: gi|57575376|gb|CX548351.1|CX548351
EST:     TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAG                         TTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
genomic: TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctaca ... ttgaatttagTTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
EST: gi|57575129|gb|CX548104.1|CX548104
EST:     TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAG                         TTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
genomic: TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctaca ... ttgaatttagTTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
EST: gi|21601338|gb|BQ611669.1|BQ611669
EST:     TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAG                         ---------GGG-CCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA
genomic: TTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGgtatgctaca ... ttgaatttagTTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTA