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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttagatagagctgttcag

Basic information

species Glycine max
transcript GLYMA08G14190.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 6
GTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttag-atagagctgttcag-------------------------------
||  ||| ||||| || || |  ||||| || |||||||| ||  | || || ||| |  |||| || ||||| || || |||||||||||||||||||||||| |||| |    | |  |   || ||    | |   |  | || ||   | | ||                                  
GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGgcaggtttgtcagaacttaatcttagcttggtagatgaaaatcattatcatgagtattttgttatttttcagagccaaacttactaccctggattgccca

upper sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g29470.3 (Oryza sativa), 5'ss of exon 6
GTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttag-atagagctgttcag-----------------------------------
||  ||| ||||| || || |  ||||| || |||||||| ||  | || || ||| |  |||| || ||||| || || |||||||||||||||||||||||| |||| |    | |  |   || ||    | |   |  | || ||   | | ||                                      
GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcagaacttaatcttagcttggtagatgaaaatcattatcatgagtattttgttatttttcagagccaaacttactaccctggattgcccatgcc

upper sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G115304_T01 (Zea mays), 5'ss of exon 6
GTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttg--tgtataagttgcctgtgaactttgttaga-tagagctgttcag-----------------------------
||  ||| ||||| || || |  ||||| || || ||||| ||  | || || ||| |  | ||||| ||||| || ||||||||||||||||||||||||||| |||| |    | |  |||| |||    |  | | | | |  |   ||  ||| |||                               
GTCCAAACAATCTTTATCCAGATGATCTAATTCCATTTACAAGATATCCACTGTTCCTTGTAATTGATAGTGAAAATAGCCATGCATTCAAGgcaggtttgtcagaacttaatcttggcttgtagaagaaaaccattaccatcggcactctattgcttttctaaagtaacatgtttaccaggttgcccatgc

upper sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttg---tgtataagttgcctgtgaactttgttagatagagctgttcag---------------------------------------
||| ||| || || |||||||| || || ||||| |||||  ||||||| |||||||| || ||||| || || |  |||| |||||||||||||||||||||| |||| ||   ||    | | |     | |||  |  ||   |   ||   || | |                                         
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaa--ctatgcgatatttgctgatggattgtaataaaataaacaaactccag

upper sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
GTTTAAATAAT---CTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttagatagagctgttcag----------------------------------
||| |||||||   || |||||||| ||| | || || ||||| || | ||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||   |  |    |   |     ||   ||  || ||  | ||   |||  ||                                  
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaa--ttattctacagcagtgtatagcttctaaactaggtgttacttctttcaaaagatg