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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATGgtaagaatccattgcgctcgatcataaatattggatgacatattttccttgcaactcttaccatcattattgtttgcctaactaaagtcaaaagtgttctgctaattcaatcatgttatgatattaagcatttaatttttttccctcctag

Basic information

species Glycine max
transcript GLYMA08G14040.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 3
CAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATGgtaagaatccattgcgctcgatcataaat-attggatgacata-ttttccttgcaactcttaccatcattattgtttgcctaactaaagtcaaaagtgttctgctaattcaatcatgttatgatattaagcatttaatttttttccctcctag
| ||  ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||| | ||| || |||||||||| | |   |||    ||| ||   | |   || |    | |||| || | |  | | |  |    ||| || ||  | | |    | ||     ||||     | ||||  |||  |                                
CCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataa-gctatggtctgttttattctt-ttaacttcattctt----tgcaattttgtcctag------------------------------

upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 7
CAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATGgtaagaatccattgcgctcgatcataaat-attggatgacata-ttttccttgcaactcttaccatcattattgtttgcctaactaaagtcaaaagtgttctgctaattcaatcatgttatgatattaagcatttaatttttttccctcctag
| ||  ||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||| | ||| || |||||||||| | |   |||    ||| ||   | |   || |    | |||| || | |  | | |  |    ||| || ||  | | |    | ||     ||||     | ||||  |||  |                                
CCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataa-gctatggtctgttttattctt-ttaacttcattctt----tgcaattttgtcctag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193390001|gb|FK357658.1|FK357658
EST:     GCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA