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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAAAGAAGATAAAATTAATAGCAATACAACATTGAAAGATCTTGATCTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAAgtgagttcctactttttaagagcaacttcggttaaaagtgattggtatacaatttatttttctgtacaagtagggagtatttgttgacaaatttccagaa...

Basic information

species Glycine max
transcript GLYMA08G13450.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13450.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 8
ATACAAAAGAAGATAAAATTAATAGCAATACAACATTGAAAGATCTTGATCTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAAgtgagttcctactttttaagagcaacttcggttaaaagtgattggtatac---aatttatttttctg-tacaagtagggagtatttgttgacaaatttccagaa
||||| |  |||| |||||| |    ||||| |||||||||||||||||  ||   |||||||||||||||||||||  ||| ||  | ||||| ||  ||| |||||||  | |||  ||  |  |||  || |       |  |||||   | ||  |  | |   |    | |   | ||  | ||    |    |||   
ATACAGATAAAGACAAAATTGACTCAAATACCACATTGAAAGATCTTGACTTATCTTATGAATTTCATATGGATAAATCATTGCGGAAGTCCCTCTTTCAgtaagttcct--tgttttggaaaattttcatttcacttgtgctaatatacctcagttggtcatcccactttgggcaacaaatacattttattgatcagccat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964406|gb|BM271141.1|BM271141
EST:     CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAA                         ACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA
genomic: CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAAgtgagttcct ... tctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA
EST: gi|51343270|gb|CO984003.1|CO984003
EST:     CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAA                         ACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA
genomic: CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAAgtgagttcct ... tctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA