1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATTTGCACGGCTTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactctattattatacatacatacacacatctctctgtctatatctctcaattgacactagtgtaagacttggcactcttgcacaattacaactt...
species | Glycine max |
transcript | GLYMA08G13300.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|193688874|gb|FK627851.1|FK627851
genomic: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: GTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|192326977|gb|FK019239.1|FK019239
genomic: GTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAGG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|4283991|gb|AI440725.1|AI440725
genomic: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|26268738|gb|CA819801.1|CA819801
genomic: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: TGGGACATATATGTTGAATAAGCCTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|24136625|gb|BU927135.1|BU927135
genomic: TGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|58015032|gb|CX701774.1|CX701774
genomic: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: GGACATATATGTTGAATAAGCTTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|15203704|gb|BI426472.1|BI426472
genomic: GGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: GTTGAATAAGCCTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAEST: gi|58016818|gb|CX703560.1|CX703560
genomic: GTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
EST: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCNTGAGTGCAAG GTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
genomic: TTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactc ... tgaatgccagGTAGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTTGCACGGCTTAGTGCTGTTTATGGTGGGACATATATGTTGAATAAGCCTGAGTGCAAGgtatatactctattattatacatacatacacacatctctctgtctatatctctcaattgacactagtgtaagacttggcactcttgcacaattacaactt
- - - - - - - - - GCTGTT
- - - - - - - - - - - - - TGGTGG