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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgtaattgcattggctttatattgaatgttgagagtttatatcacatgattgattcacaccatgctctgatgcttctgcaaattccagtgcat...

Basic information

species Glycine max
transcript GLYMA08G12970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12970.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G20050.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgtaattgcattggctttatattgaatgttgagagtttatatcacatgattgat-tcacaccatgctctgatgcttctgcaaattccagtgcat---------------------------------------------------------------------------------------
|| |||||||| || || | | || | || ||||||||||| ||||| |||||||| ||  ||||| ||||||| || ||||||||||||| ||||||| | ||  | ||    |  ||    | | || || || | |   ||  |||| | || | | | | | |    | || |||       |    | | |                                                                                        
GTCGAAAAGCTTGGGAAAGTTCCATTGATAAACTGTGCCAAAACCAGCATGTCCTCCAAACTGATATCTGGTGACAGCGACTTCTTTGCCAATTTGgtacgcttccagttctccttactaagcaat-aacgtggaaattcattaaaacattagtgttattaaaacctatgtttattcttggttttttcttgggggactcttttctacttaaatctggtttatcttgcaataataccctagtcattgcatgtggctgaactgttataatcacatttcttttaaag

upper sequence: GLYMA08G12970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 7
GTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgtaattgcattggctttata-ttgaatgttgagag-----tttatatcacatgattgattcacaccatgctctgatgct-tctgcaaattccagtgcat
|||||||| || ||||| |||||||| || || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| || | |||||||||| |   |     ||   |||||| || || |   | |       | | | ||||  |  | |  ||| |||  |    |||| |||      |  |      
GTTGAAAAACTTGGAAAAGATTCACTTATAAATTGTGCCAAGACAAGCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttccacctttttttttttatagttaaaagagcaaaagcagactaagaacacagaaagggtgtacatcata-taaattgctgtctattggctata------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205364|gb|BU964617.1|BU964617
EST:     GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTG                         GTTGTAGATGCAGTGCAAGCT
genomic: GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgt ... atttgcacagGTTGTAGATGCAGTGCAAGCT
EST: gi|33390479|gb|CA853674.1|CA853674
EST:     GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTG                         GTTGTAGATGCAGTGCAAGCTGTAAAGATGACCAATGCTCGAGGTGAAGTT
genomic: GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgt ... atttgcacagGTTGTAGATGCAGTGCAAGCTGTAAAGATGACCAATGCTCGAGGTGAAGTT
EST: gi|120533836|gb|EH261969.1|EH261969
EST:     GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTG                         GTTGTAGATGCAGTGCAAGCTGTAAAGATGACCAATGCTCGAGGTGAAGTT
genomic: GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgt ... atttgcacagGTTGTAGATGCAGTGCAAGCTGTAAAGATGACCAATGCTCGAGGTGAAGTT
EST: gi|18040032|gb|BM308326.1|BM308326
EST:     GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTG                         GTTGTAGATGCAGTGCAAGCTG
genomic: GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgt ... atttgcacagGTTGTAGATGCAGTGCAAGCTG
EST: gi|254323555|gb|GR836001.1|GR836001
EST:     GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTG                         GTTGTAGATGCAGTGCAAGCTGTAAAGATGACCAATGCTCGAGGTGAAGTT
genomic: GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTTGCCATTTTGgtatgtttgt ... atttgcacagGTTGTAGATGCAGTGCAAGCTGTAAAGATGACCAATGCTCGAGGTGAAGTT