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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAGgtaaatattctcccttaaatacatcaggcagaaattgacattgtaatgattttctggttacgtttttacttttcag

Basic information

species Glycine max
transcript GLYMA08G11980.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208252034|gb|GE046523.1|GE046523
EST:     CTAACATACTTTTCTCATCTGGAACCACGG                         GGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCAATACGAAGTGCAG
genomic: CTAACATACTTTTCTCATCTGGAACCACAGgtaaatattc ... tacttttcagGGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCAATACGAAGTGCAG
EST: gi|4405666|gb|AI507815.1|AI507815
EST:     TCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAG                         GGGAGCCAAAAGC
genomic: TCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAGgtaaatattc ... tacttttcagGGGAGCCAAAAGC
EST: gi|9901283|gb|BE610251.1|BE610251
EST:     TCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAG                         GGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCAATACGAAGTGCAG
genomic: TCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAGgtaaatattc ... tacttttcagGGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCAATACGAAGTGCAG
EST: gi|192295038|gb|FG986757.1|FG986757
EST:     TCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAG                         GGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCAATACGAAGTGCAG
genomic: TCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAGgtaaatattc ... tacttttcagGGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCAATACGAAGTGCAG