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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAGTGTTGTGGGAATCCGTGCAACTATTACGAGATTGTCCCAGCTTTTGAGAGAACATGATGAAGAGCTGTGGCGACATCTTGAGGTCACTTCTAAGgcaagacagtttctagtatatattcttgatattattctatcttctcacagttccctttcagtttaaatttggaaatattacgagaggataggcatttctg...

Basic information

species Glycine max
transcript GLYMA08G11760.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685538|gb|AW756186.1|AW756186
EST:     TGAGAGAACATGATGAAGAGCTGTGGCGTCATCTTGAGGTCACTTCTAAG                         GTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAG
genomic: TGAGAGAACATGATGAAGAGCTGTGGCGACATCTTGAGGTCACTTCTAAGgcaagacagt ... tgaatgtcagGTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAG
EST: gi|8401709|gb|BE057343.1|BE057343
EST:     GGTCACTTCTAAG                         GTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAG
genomic: GGTCACTTCTAAGgcaagacagt ... tgaatgtcagGTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAG
EST: gi|31468589|gb|CD410617.1|CD410617
EST:     TGAGAGAACATGATGAAGAGCTGTGGCGTCATCTTGAGGTCACTTCTAAG                         GTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAG
genomic: TGAGAGAACATGATGAAGAGCTGTGGCGACATCTTGAGGTCACTTCTAAGgcaagacagt ... tgaatgtcagGTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATAGTGTTGTGGGAATCCGTGCAACTATTACGAGATTGTCCCAGCTTTTGAGAGAACATGATGAAGAGCTGTGGCGACATCTTGAGGTCACTTCTAAGgcaagacagtttctagtatatattcttgatattattctatcttctcacagttccctttcagtttaaatttggaaatattacgagaggataggcatttctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc