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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAGTTTTTAATCAGGACCCATTGTATAAATTTAAACACAAAGATGAAGGTTATGCTATAGACTGGAGTCCTCTTGTTCCTGGAAAGCTTGCATCTGgtaatctttagttatatgtttttcagtttagctatgttttcctctggcatgtctccatatttagtgatcacagatatatgaagcttgacaatgatcttcatttttgaag

Basic information

species Glycine max
transcript GLYMA08G11020.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTGCAGTTTTTAATCAGGACCCATTGTATAAATTT---AAACACAAAGATGAAGGTTATGCTATAGACTGGAGTCCTCTTGTTCCTGGAAAGCTTGCATCTGgtaatctttagttatatgtttttcagtttagctatgttttcctctggcatgtctccatatttagtgatcacagatatatgaagcttgacaatgatcttcatttttgaag
    | ||| |||| || |  || |||  ||| |||      |||||||||||||| |||||||||||||||||||||       ||||||  |||   || ||||   ||   | | |  ||| |  | |     ||  || | |   || | ||  |||  | | || | |    | | |      || | |                  
---CCGGTTCTTAACCAAGCACCCTTGGTTAACTTTTCTGGTCACAAAGATGAAGGCTATGCTATAGACTGGAGTCCTGCAACCGCTGGAAGACTTCTTTCCGgtatagttatctcagaaatttctgcgatactaaataattacat---gcttttcggcatggtcaatg-taatttttttttctccactggctag-----------------

upper sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 6
GCTGCAGTTTTTAATCAGGACCCATTGTATAAATTTAA---ACACAAAGATGAAGGTTATGCTATAGACTGGAGTCCTCTTGTTCCTGGAAAGCTTGCATCTGgtaatctttagttatatgtttttcagtttagctatgtt----ttcctctggcatgtctccatattta-gtgatcacag-atatatgaagcttgacaatgatcttcatttttgaag
    | | | ||||||| |  |||||   ||| |||      ||||| || ||||| |||||||| |||||||| ||| |||| ||||||||||||| | |||||| | |   ||  ||| |||  |   ||   |  |||    |   ||||   | |||  |  |||  || |||| |  | |   |    |||| |||| | ||  |||   |||
---CCTGCTATTAATCAAGCTCCATTAGTTAAGTTTGGTGGGCACAAGGACGAAGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcatgtagtatttttcacttatttattgagttgagttctttctgaagtatctgtaactttccgttatcaaaatagaccagtgttttgataatggtgtttctttccaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11273936|gb|BF324324.1|BF324324
EST:     AGGTTATGCTATAGACTGGAGTCCTCTTGTTCCTGGAAAGCTTGCATCTG                         GGGATTGCAATAATTGTATTTATCTGTGGGAGCCTACATCTGCTGGAACGT
genomic: AGGTTATGCTATAGACTGGAGTCCTCTTGTTCCTGGAAAGCTTGCATCTGgtaatcttta ... atttttgaagGGGATTGCAATAATTGTATTTATCTGTGGGAGCCTACATCTGCTGGAACGT