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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGGATGAGAAACTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTAGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGgtatgctcaatgttttattggagtagctaataactaacttgtttctgaatttttattcaagcttctgccataatcaggcactcctattggtctttctctccatgctgatattgacattattgatattttgttgttag

Basic information

species Glycine max
transcript GLYMA08G10180.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTTTTGGATGAGAAACTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTAGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGgtatgctcaatgttttattggagtagctaataactaacttgtttctgaatttttattcaagcttctgccataatcaggcactcctattggtctttctctccatgctgatattgacattattgatattttgttgttag------
||||||||| |||||||| ||||| || |||||||||||||||||||| ||| | |||  |   ||||| |||||| |||| || ||||| || || |||||   |||  |  ||| ||  | |   || |   |   |   |    |    |  ||| ||       |||  || |  |  |   |   |  |  |||  ||   | | |||    |  ||   |||| || ||        
GTTTTTGGACGAGAAACTCCGTGCTGGGAATAAGGGTACTTCTGAAGAAGAATTGGAGAGTGTTCTTGAAAAAGTCTTGGTTTTGTTCAGATTTATCCAGgttatctc--taatttcttacatttagtactgtgtttgtcactgtaaatcactgcttcgaggccagtgcatggtctgtaaaccagctatttgatcttctggatatcggttttg---ctgatggatttttattatttatcaaag

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 7
GTTTTTGGATGAGAAACTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTAGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGgtatgctcaatgttttattggagtagctaataactaacttgtttctgaatttttattcaagcttctgccata-atcaggcactcctattggtctttctctccatg---ctgatattgacattattgatattttgttgttag--------------------------------
|||| ||||||||||||||||||| || || |||||||| |||||||||||  | |||| |||||||||||||||  |||| ||||||||||| || ||||||   |  |  | ||  ||   | |  |  |   |  ||  ||  | ||| || |   || | |     || |||||  | |  | ||  |   |  ||  ||    ||| | |||    |||||  |   || ||  |                                 
GTTTCTGGATGAGAAACTTCGTGCTGGGAACAAGGGTACATCTGAAGAGGAGTTGGAGGGTACACTTGATAAAGTTTTGGTTTTATTCAGGTTTATCCAGgtaacatggacatgttcatga--tggaaagcaggaagtttagtttagcattgttttaggagttccatttctatatcagcgattgttgtttttgcattgctatatagttctgttcttgtgtatattgtcaaaatgatgccaaggaatatctcatattatctcctgtcaattaag