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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCAAATACACTGGTACATCATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtctaaacctttttcatgttctattagtactcgttttacttactatggacttatctctttgatatag

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 5'ss of exon 6
AGTGCAAATACACTGGTACATCATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaaga-----tgtctaaacctttttcatg--------ttctattagtact---cgttttacttactatggacttat----ctctttgatatag--------------------------
    |||||||||||||| || |||||||| || || |||||||| || || || ||||| |||||||| || | || ||||||  | ||| | || || |||||      |   | |  |||| | |||        ||| | |     |   | | | || | |||| | | |||    ||  |    ||                            
TCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAGCGACTCGAAAATTTTTTGAAAGCCACAGATATTTTGGCTTAGAGCCTGACCAAgtaaggatcactactttattctttattatgaacggaaattccagtgaagttcaacatgtgacctcctattgccctatgaaacttctaagaattatgtttgacttgattctttattcgtag

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 6
AGTGCAAATACACTGGTACATCATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgt--ctaaacctttttcatgttc--tattagtactcgttttacttacta---tggacttat---ctctttgatatag
|||   |||||| ||||| || |||||||||||||| |||||||| || ||||| ||||  ||    ||||| || |  |||||||||||  |||| || ||||||||   || |    | |  |  |||  ||||  |  |   ||    |  ||       |||     ||  ||  || ||
AGTTACAATACATTGGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATATTTCTCGAGTCACAAGTACTTTGGTCTTGAACCAGATCAAgtaagatgctgcttatttgtataaacattccttattgttgtttccttcgtctcttagaccaatcttgatcacttcttactacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454569|gb|AW185252.1|AW185252
EST:     CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAG                         GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGA
genomic: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtc ... tttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGA
EST: gi|10235209|gb|BE804156.1|BE804156
EST:     CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAG                         GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGGATGG-AG
genomic: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtc ... tttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGG-ATGGCAG
EST: gi|254329705|gb|GR839258.1|GR839258
EST:     CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAG                         GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGA
genomic: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtc ... tttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGA