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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGTATTCCAGCTGATGGAGTTGTGAGATCTGGTAGAAGCACTGTAGACGAATCAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGGgtactttctatctcaacatattctcttataatttgagatttatttggcttttgacacaacttgtagcttttattggttcctttgagcacatgcggatgct...

Basic information

species Glycine max
transcript GLYMA08G07710.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0142g00400.t01 (Vitis vinifera), 5'ss of exon 4
GATCGTATTCCAGCTGATGGAGTTGTGAGATCTGGTAGAAGCACTGTAGACGAATCAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGGgtactt-tctatctcaacatattctcttataatttgagatttatttggcttttgacacaacttgtagcttttattggttcctttgagcacatgcggatgct--
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GACCGTGTTCCAGCAGATGGAATTGTCAGGGCTGGTAGAAGCACAGTTGATGAGTCAAGTTTCACAGGGGAGCCTTTGCCTGTGACAAAACTACCTGGGgtactagtctattaca-tataa-ctactgttttctgcaaaacacccctagttggatgctaaa-gaaaaattagaaaaaaaagaaaagaaaagaaaaaagttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134590|gb|AW132983.1|AW132983
EST:     CAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGG                         AGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAA
genomic: CAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGGgtactttcta ... atttctgcagAGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAA