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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATGCGGAGTCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTCTATGGACTGGGAGAGTTGCCTCAGgttctctatatctatttcctttttaaacttggaaaacttcaggaactaactttggtttcatttatttccttaag

Basic information

species Glycine max
transcript GLYMA08G07250.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G084440_T01 (Zea mays), 5'ss of exon 7
ATTTATGCGGAGTCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTCTATGGACTGGGAGAGTTGCCTCAGgttctc-tatatctatttcctttttaa-acttggaaaacttcaggaactaactttggtttcatttatttccttaag------------------------------------------------------------------------------------------------------
 | ||||| || || || ||||||||||||||||| || |||||||| || || || || || ||||||||| | ||||||||  |  | ||   ||     |  ||| | |   || | |      | |||   |  |   | | ||     |||                                                                                                       
CTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACCCTCTATACGGTCTGGGAGAGCTCCCTCAGgtaataatttaataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataatactttttaggcttcgttattgtaaactgaaacgtcgatacgatgatgctttcttttatttgtcatgaaatcaaag

upper sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0017g00490.t01 (Vitis vinifera), 5'ss of exon 6
ATTTATGCGGAGTCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTCTATGGACTGGGAGAGTTGCCTCAGgttc-tctatatctatttcctttt-taaacttggaaaacttcaggaactaactt----tggtttcatttatttccttaag
 | ||||| |||||| | ||||||||||||||||| || || || || |||||| | |||||| |||| || ||||||||||||  | |  |||| |    || | || |  | |  | ||  |   | |  |||    ||||||   || || |    ||
CTCTATGCAGAGTCCTTGGCACGCTTTCAAGGAGGATCTCCCTATATCTATCCAATGTATGGATTGGGGGAATTGCCTCAGgtttgttttcatctgtaattttgtgtatatgtagggagctatattgatttgcttcacatggtttttgttgttactggcag

upper sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S20_16V6.1 (Physcomitrella patens), 5'ss of exon 7
ATTTATGCGGAGTCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTCTATGGACTGGGAGAGTTGCCTCAGgttctctat--atctatttcctttttaaacttggaaaacttcaggaactaactttg-----------gtttcatttatttccttaag-------------
 | || || |||||  | || || ||||||||||| ||||||||||| ||||||||||| || || || |||||||| ||||||| |  |   | |  |||  |||| |   ||       | || || |     |            || ||   | || |  ||               
TTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATCCACTCTACGGCCTCGGCGAGTTGCCACAGgttcgcgtttagtttgattcagtttttatgatgctgcctgttagtaagtgttccttacaggcaagatgtgtcgcctgttcctgtacaccgaaatatgttt