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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAGgtttttgtcttaaactcttactaggttacagtctcattctccaagtatgcaattttttataaaaggaaaatgtggttgttagaactcattttgtatataa...

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 6
CTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAGgtttttgtcttaaactcttactaggttacagtctc---attctc--caagtatgcaattttttataaaaggaaaatgtggttgtt--agaactcattttgtatataa------
|||||||| |||| |||||| ||||| ||||||||||| ||||| || || ||||| |||||  ||||||| |  |    || | ||    |  || | | |||   ||| ||   |   ||| |   |   |  |  |  | |||   |  ||   | |   ||| ||   |||       
CTTCTTGCCGAGAAAGGTGAACTTCCAACAAGATTTGGTTCAGCTACACTGGGAATTCTTCTCCTGCAGgtatccgatcgaagccctatacattttcctgcctccaaattatcattattcatgaatcctccaaggagtgtgagatgcattaattcctggatgtattctgctgatactcacag

upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 7
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
CTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAGgtttt---tgtcttaaactcttactaggttacagtct----------------cattctccaag-tatg-caattt---tttataaaaggaaaatgtggttgttagaactcattttgtatataa------------------------------------------------------------------
||||||||||||| ||||||||| |||||||||||||||||||||||  | ||||| |||||| | |||||| |   | || |  |   |  |||  ||  | |||                |||||   ||| |||| |||| |   |||   ||| |||  |   ||| | | || ||||     |||                                                                     
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatcctgtataatctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaaaccttttcacttacgcttctcgcattgcttgcag

upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
CTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAGgtttttgtcttaaactcttactaggttacagtctcattctccaagtatgcaattttttataaaaggaaaatgtggttgttagaactcattttgtatataa---------------------------------------------------------------------------------
||||||||||||| ||||||||| || ||| ||||||| ||||||||| | |||||||||||  | |||||    |  ||||  | |   ||  |  |  | || | |||    |||  ||||  | ||      | | |     | |||    ||||| || || |                                                                                   
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtac--gatttaatatttgcgtaact--ctttatcgtcctctttttatataattaatgatgcttttatatttc--cttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcag