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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatggcataaagtatgttaaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc...

Basic information

species Glycine max
transcript GLYMA08G06160.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatggcataaagtatgttaaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc------
 || || ||||| |||||||||||||||||  | || || ||||| ||||| ||||| ||||| ||||| || ||  | || |||||||| ||||| ||||||||       | |  |  ||   | | |      ||   | | |||||||   ||   | | |   |     ||||   | ||||   |     |  |      
ATCTTACCGTGCACCTGAGGTTATTTTGGGTTTGCCTTATGACAAAAAGATAGATATGTGGTCACTTGGATGTATACTAGCTGAACTTTGCACTGGAAATgtaagtg-----gttactgcataccggttattgcaccacttaat-tgttaaatcctttcatctcatggctttctattttctttttgactgaacttgtcgctgtttt

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaagg----accaaagat-gattaatgtagttcaaaatggcataaagtatgttaaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc
 || || ||||| |||||||||||  ||||  | || || ||||| ||||| ||||| ||||| ||||| || || || ||||||||||| ||||| ||||||||     ||   | || |  |||| | ||||| ||  |       |||  | |   |||  || || || |  ||  ||   ||  | |   | |  | |  
ATCTTACCGTGCACCTGAGGTTATACTGGGCTTGCCTTATGACAAAAAGATAGATATATGGTCACTTGGTTGTATATTAGCAGAACTTTGCACTGGAAATgtaagtggttactgcatattggctaatattgttcataactgttattgctatactta-tggttatgtgtt-gttcatgatgtt---ctggtaatgtaaaggagtag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatggcataaagtatgttaaacagttgagtt--ttagtaccagaaatttatctcttgagccataaaatttc--
 ||||| |||||||| || || ||| | || |||||||| || || ||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||  |||     ||| |    |||| |||     ||||  ||| | || |   | || |   ||| |||  | | |  |  |||| | | |    || |  
ATCCTACCGTGCTCCAGAAGTCATTCTTGGGCTTCCATATGATAAAAAGATAGATATCTGGTCACTTGGCTGCATTTTGGCAGAACTATGTACCGGCAATgtaagttccagcatcgatgataccagttaaaagctttataat-tatat-aatccactaagctagctaggaccctataat-gtaacttgcgtc-tgcttttgcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatg-attaatgtagttcaaaatggcataaagtatgttaaacagttgagttttagtaccagaaatttatctctt-gagccataaaatttc
||| ||||| || || || || |||||||||||||| || || || ||||| ||| | ||||||||||| ||||| || || ||||| ||||| ||||| |||||  |   |  |  ||| |  | || ||     |  |   |  |  | |    ||   ||||   |    ||||   | ||   |||  | ||||||  
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt--

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatggcataaagtatgttaaacagttgagtttt-agtaccagaaatttatctcttgagccata--aaatttc--------
||| ||||| || || || || |||||||||||||| || || || ||||| ||| | ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||  |   |       | |  || |  | ||   ||    || |||     ||||| |||| || || ||||  | |   | ||    |||   | || |        
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTGGCTGAACTGTGTACAGGCAACgtaagttctgga-------atttcagct--agataatattgtcta-gtttggttgttgatttttgaggacaagaaggtgaatccgtgtttaatatcgagttacttttgcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 11
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatggcataaagtatgttaaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc
||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||| ||||||| ||||| || |||||||| |||||||| |||||||||||||| ||   |  | ||   |||  |||        || || ||||  || |||| |||| ||  |        |   | | | |||  |  |  |   
GTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATgtaagtactgtatttcatggttgtttttctcctacatatgaattatggcaagcagtggagtgtttttctttcttctccttttttggagaaaataggtagg