Sequence
atgc intronic sequence ATGC exonic sequenceGGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgattatagtacatttgtcattccttcttcaatttattgtcattcctgtggtaagaattatttaaatatttcaatcgaacag
Basic information
species | Glycine max |
transcript | GLYMA08G05700.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g45620.1 (Oryza sativa), 5'ss of exon 6
GGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgattatagtacatttgtcattccttcttcaatttattgtcattcctgtggtaagaattatttaaatatttcaatcgaacag
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GGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGgtactgcta-atcttttctaccatgaggattttggta-atagtcttttcttatgcatggtgtctctctctctctctatctt-tag
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 7
GGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgatta--tagtacatttgtcattccttcttca-atttattgtcattcctgtggtaagaattatttaaatatttcaatcgaacag
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TGAACGCGAACCAATAGCACAGCCTATCTCAAAGCTTGAGTTTGAGTTCGAGAAGAGGAAATTGGCCAAAGATGATGTCCGGGAATTAATTTACCGAGAGgtgccactgatgaattcttttgtgaatattacgacagagctgccacttgactctttactgtactaatatacttgttaaatctctttag
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G062761_T01 (Zea mays), 5'ss of exon 7
GGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgattat---agtacatttgtcattccttcttcaatttattgtcattcctgtggtaagaattatttaaatatttcaatcgaacag
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TGAACGTGAACCCATAGCACAACCTATCTCAAAACTTGAATTTGAGTTTGAGAAGCGGAAACTGGCCAAAGATGATGTCCGAGAATTGATTTACCGAGAGgtactattgctcaattacattcttgacatcattgtagagctgctcctttcattacttttctagctcttgttacctctctttag-----
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 8
GGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgta-----tgattatag--------tacatttgtcattccttcttcaatttattgtcattcctgtggtaagaatt-atttaaata-----tttcaatcgaacag------------
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AGAGCGTGAACCAACAACACAGCCAATTTCAAAGCTTGAATTTGACTTTGAGAGAAAGAAGTTAGTTAAAGATGATGTCAGAGAATTAATTTACCGAGAGgtaacaaacaaacacaaaagccttctacatatatcctt--ttctttaatctgaatttgtttcaatgttattcattgatcctaacaatcacttttctttggattttgtaaatatcag
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 7
GGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgattatagtacatttgtcattccttct-tcaatttattgtcattcctgtggtaagaattatttaaatatttcaatcgaa-cag
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AGATCGTGAACCTTCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTAACAAAAGATGATGTTAGGGAGTTAATATATCGAGAGgtatggggtcacaactttctttgatggtattgtgggttttatgctgtcagtagagttataacaaatttt-tgtttaaattgaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151400964|gb|EV270778.1|EV270778EST: AGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAG ATTTTGGAGTATCATCCCCAAATGCTCCAGGAATATCTTCGTGGTGGAGAT
genomic: AGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgattat ... aatcgaacagATTTTGGAGTATCATCCCCAAATGCTCCAGGAATATCTTCGTGGTGGAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTAAGAGAGTTGATTTATCGAGAGgtatgattatagtacatttgtcattccttcttcaatttattgtcattcctgtggtaagaattatttaaatatttcaatcgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA