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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagataaataactgttttacttcaattttctattttatatgatacttacccctggttttcccatgtcag

Basic information

species Glycine max
transcript GLYMA08G05480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagataaataac-tgttttacttcaattttctattttata-tgatactta--cccctggttttcccatgtcag----------------------------
|| || || ||  | ||||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||||    ||    | |    ||  | ||| | |  |   | | | |||  ||  | |   | |   | || |||                             
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagata-----aataactgttttacttcaattttc----tattttatatgatacttacccctggttttcccatgtcag-----------------------
||||| || ||  | ||||||||| || | ||||| |||||||| |||||||| || |||||||||||||||||||| |||||| | || ||||| ||||||    |      |||  | ||||  || | |  |     | |||   |   |||| |    || |      |||  |                        
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttg-taaatttatgctaatcttttttgtgtctttgtgctag

upper sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagat------aaataact-----gttttacttcaattttctatttt--atatgatacttac---ccctggttttcccatgtcag
|| || ||||| ||| |  | ||  | ||||||||| | |   | |||||||| ||||||||  | |||||||| |||||||||||||||||||| ||||||| ||      || | |||     |  | | | | ||     | |     ||| ||| | ||   | ||   | |    ||||||
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag

upper sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 6
ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagataaataactgttttacttcaattttctattttatatgatacttacccctggtttt-cccatgtcag
|| || ||  |||||||| | ||| | ||||| || || ||||| || ||||||||||||||||| || ||||| |||||||||||||||||||| |||||||       || ||  | | |   ||| | |  | | |    | ||||     |  |      || ||||
ACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGgtaatattcaaattgactgaatgtcattatttggtgtttcaatttcttatggtagtctgcatttatttcag