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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCATATCATGTTAGTGGGTACCGCTACTTATTAGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgttagcatctggctctgttctgattatttcccatttttttttatcaatgtgtgatattaaactgaaagatataacttgttattcaagcttctg...

Basic information

species Glycine max
transcript GLYMA08G05260.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05260.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g06030.t01 (Vitis vinifera), 5'ss of exon 8
GAATGCATATCATGTTAGTGGGTACCGCTACTTATTAGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgttagcatctggctctgttctgattatttc-ccatttttttttatcaatgtgtgatattaaactgaaagatata-acttgttattcaagcttctg
 ||||||||||||||| | || || || |||||| | || |||||||| ||||||||||| ||||||||||||     ||||||||||||  |||||||||| ||   |  ||  |||  | |      |  |   |  |||||| | || |  |  ||  | ||||          | |  |    ||  |||    | | 
AAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATGGTGACAGAAATGTATCTAGGGCTTCTCCACCGGGAAAAGTTACAACCCTAACAAAGgtttgcactctgccactg--tttagctcaaccacaacatcattttgtcttgtttacatgcaaaattaggtccttgcttctttataaattgatcagagcttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929460|gb|BU546599.1|BU546599
EST:     GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAG                         GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAG
genomic: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgtt ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAG
EST: gi|22927616|gb|BU544755.1|BU544755
EST:     GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAG                         GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAG
genomic: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgtt ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAG
EST: gi|193349272|gb|FK314050.1|FK314050
EST:     GAAATGTATCCAGGGCTTCTCCAGAAACAAA-GTTACAACTTTAACAAAG                         GAGTCCTTACTTGCTA
genomic: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgtt ... cctggtacagGAGTCCTTACTTGCTA