1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatcatttctgattcctttggatttaatcttttgtgcctttttttttataaaaaaaagtatatatcttcttgcatttggtttcccttcaatacggtttccatttttttaccaaactacacttttattag
species | Glycine max |
transcript | GLYMA08G05100.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAG GGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACAGCAEST: gi|207692232|gb|GD675395.1|GD675395
genomic: ACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatca ... cttttattagGGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCA
EST: ACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAG GGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCAEST: gi|193649490|gb|FK597957.1|FK597957
genomic: ACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatca ... cttttattagGGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCA
EST: ACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAG GGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCA
genomic: ACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatca ... cttttattagGGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatcatttctgattcctttggatttaatcttttgtgcctttttttttataaaaaaaagtatatatcttcttgcatttggtttcccttcaatacggtttccatttttttaccaaactacacttttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC