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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAGGAACTGCTATGTTGATCAAGAGGTTTATCGCATGCTGAAATGTTCCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaattaattcattttacttatcaacaaattttatcctgaaccaatgttcacccctcactcattgttttatactttctcatacatatatatatag

Basic information

species Glycine max
transcript GLYMA08G03340.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03340.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g02430.t01 (Vitis vinifera), 5'ss of exon 8
CTTAAGGAACTGCTATGTTGATCAAGAGGTTTATCGCATGCTGAAATGTTCCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaattaattcattttacttatcaacaaattttatcctgaaccaatgttcacccctcactcattgttttatactttctcatacatatatatatag-------
| ||||||||||||||   ||  |||| |||| | |||||||| | ||| |||| |||||||||  ||||||||||||||  |||||  | ||||||||||||||  |||| |      | | || |||  ||| | | |  ||||  | | |     |   || ||   | |||   ||||| || |||||  | | |        
CCTAAGGAACTGCTATTCGGAGAAAGAAGTTTCTGGCATGCTGCATTGTGCCTCCTTGTGCATCCAACGGGATCCTCATTCTAGGCCCCGCATGTCTCAGgttggtgaattta---gactcatttttca--aaactgttttttgaagtagtttgtggactaaacacaac-tattaccttttctaat-catatccaaaaaaatgagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963065|gb|BM269818.1|BM269818
EST:     CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAG                         GTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
genomic: CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaat ... atatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
EST: gi|193522087|gb|FK478166.1|FK478166
EST:     CGGGATCCTCATTTAAGGCCAAGAATGTCTCAG                         GTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
genomic: CGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaat ... atatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
EST: gi|213601646|gb|DB980889.1|DB980889
EST:     CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAG                         GTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
genomic: CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaat ... atatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT