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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCGAAGGTGAGAGGAGTCTCACAAAGGATTGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacctgcgttgatgatgcagtgtcctctctcattattgctccatatattaatgttagtaaattcattggtggtattatatttgggtaattgaacag

Basic information

species Glycine max
transcript GLYMA08G02940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02940.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 7
GTTTTCGAAGGTGAGAGGAGTCTCACAAAGGATTGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacctgcgttgatgatgcagtgtcctctctcattattgctccatatattaatgttagtaaattcattggtggtattatatttgggtaattgaacag
||||| |||||||| ||||||||||||||||| || || |  || ||||||||||||||   |||||| || ||||||||||||||||  |     ||  |   | ||   || ||| | |  | | ||||   || |   |  || ||||| ||  ||| || | |  ||      ||||||||
GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAATTTGATCTTAATGGAATCCCTCCAGCTCCAAGgtttgcgaaacctgtccac--tccaac-tcttctgtaa--aatactcc---tactgtaggcag-aaattgat--gtgataatctgattcctatgttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328820|gb|GR833192.1|GR833192
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|254336018|gb|GR841343.1|GR841343
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|17518873|gb|BM187915.1|BM187915
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|254328819|gb|GR833191.1|GR833191
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|15285743|gb|BI469634.1|BI469634
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|18734607|gb|BM528280.1|BM528280
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|9258803|gb|BE346950.1|BE346950
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTTCGAAGT-GATGCCAACGGCATTC
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTT-CGAAGTTGATGCCAACGGCATTC
EST: gi|192328286|gb|FK022920.1|FK022920
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|193371490|gb|FK333713.1|FK333713
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|192300936|gb|FG992996.1|FG992996
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|7232353|gb|AW567710.1|AW567710
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|13180745|gb|BG352085.1|BG352085
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|207811998|gb|GD783583.1|GD783583
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|7235265|gb|AW570594.1|AW570594
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|207771561|gb|GD742952.1|GD742952
EST:     TTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACCGGCATTC
genomic: TTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAA-CGGCATTC
EST: gi|193337800|gb|FK302111.1|FK302111
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTG
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTG
EST: gi|7041920|gb|AW471814.1|AW471814
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|7235257|gb|AW570586.1|AW570586
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|7147489|gb|AW509411.1|AW509411
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|208047363|gb|GD848254.1|GD848254
EST:     TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAG                         GGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacc ... aattgaacagGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTCGAAGGTGAGAGGAGTCTCACAAAGGATTGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGgtttgttacctgcgttgatgatgcagtgtcctctctcattattgctccatatattaatgttagtaaattcattggtggtattatatttgggtaattgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC