Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgtaacagacttatagctttatgtctgttcttgtatctactatccattatattataaaccctgctgcaattttttggcatttttatagaaatgcaatttgg...
Basic information
species | Glycine max |
transcript | GLYMA08G02690.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G02690.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g15420.1 (Oryza sativa), 5'ss of exon 7
GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgta--acagactt-atagctttatgtctgttcttgtatctactatccattatatt-ataaaccctgctgcaattttttggcatttttatagaaatgcaatttgg
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GATGTCAAGCATACAACCTTGGAACAGGAAAGGGAACATCAGTGTTGGAAATAGTTAATGCATTTGAGAAAGTTTCTGGAAAGgtatgcctgatttgatatatttggacaagtgtacatgtttcttgcctgtccttttgacatgttatgttgtgctggttaccaaatttccta----ctcaattctt
upper sequence: GLYMA08G02690.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G138410_T01 (Zea mays), 5'ss of exon 7
GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgta--acagactta-tagctttatgtctgttc----ttgtatctactatccattatattataaaccctgctgcaattttttggcatttttatagaaatgcaatttgg
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GATGTGAAGCATACAACCTTGGAACCGGAAAAGGAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctgatttaatatatttaggactccctccatttctttttagttgtcgctgtatagtgcaattttgtactatctagcgacaactaaaacgaaacgg-------
upper sequence: GLYMA08G02690.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgtaacagacttatagctttatgtctgttcttgtatct---actatccattata--ttataaaccctgctgca-----attttttggcatttttatagaaatgcaatttgg----------------------
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GTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACAGTGTTGGAGATGGTTGATGCATTTGAGAAAGCTTCTGGAATGgtaagaagatcacttctctccttctctctctctctctctcgctatacactcaaattcataagagtgtacgcacacatatgtgttgac-tctttacatcacaatgacttgatagtttgcaataatgtgtacag
upper sequence: GLYMA08G02690.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgtaacagacttatagctttatgtctgttcttgtatctactatccatta-tattataaaccctgctgcaattttttggcatttttatagaaa--tgcaatttgg-
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GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAGgtgttgaac----agtttaacatttcctactttaattcctctcttctggttttccaactcccaaagaaaagattgaacctttttctaagaactttttatttcta
upper sequence: GLYMA08G02690.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgtaacagacttatagctttatgtctgttcttgtatctactatccattatattataaaccctgctgcaattttttggcatttttatagaaatg-caatttgg
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GGTGTGAAGTGTACAACTTGGGAACTGGGAAAGGAACTTCAGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAGgtatcatatttgaatgtctgttttggttccccagattactgaatgtatctgcatttgtcattattcaaaactttgttttcttcgtttgaacaattacttg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4291681|gb|AI437654.1|AI437654EST: GAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAG AAAATTCCACTTGCAATGGCGGGTCGGAGACCTGGTGATGCTGAAATTGTT
genomic: GAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgtaacagact ... taatgctcagAAAATTCCACTTGCAATGGCGGGTCGGAGACCTGGTGATGCTGAAATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGgtaacagacttatagctttatgtctgttcttgtatctactatccattatattataaaccctgctgcaattttttggcatttttatagaaatgcaatttgg
- - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - GAGATG