Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAGCAGACAGAGCCAGCAACATATAACAATGCTCCTCTTATTGGTATTCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcatcattattcttgctttatgtccctctcgttaaaactcttgcagtgatgataatatactaatcagctttaatttcttccttgcag

Basic information

species Glycine max
transcript GLYMA08G02610.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 9
TATGAGCAGACAGAGCCAGCAACATATAACAATGCTCCTCTTATTGGTATTCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcatcattattcttgctttatgtccctctcgttaaaactcttgcagtgatgataatatactaatcagctttaatttcttccttgcag------------------------
|||||||| |||||||| || || || ||||||||||||||||||||  |  ||||  ||||| | || ||||||||||| || |||||||| ||||||||||          | || ||| |||||  |   |  ||  ||    |||  ||    |    ||     | |  ||     | | | | |                           
TATGAGCAAACAGAGCCTGCTACCTACAACAATGCTCCTCTTATTGGCTTATTGGCTCGACTAAGCGGTGGTCATGGTGGATACAACCAGCTACTTCCAGgtacacagggtggt-tttttgttttattgcttgcatgtggaagtctttg--gttcctaagtcattgagtttaagttatgcatttccgtggttaatgatcaatgtttttgttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440190|gb|BE440700.1|BE440700
EST:     GCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: GCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|22524879|gb|BU083690.1|BU083690
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|19270738|gb|BM886994.1|BM886994
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|10233073|gb|BE802018.1|BE802018
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGTCTATAACCAGCTTCTGCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|22524818|gb|BU083629.1|BU083629
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|19937468|gb|BQ081301.1|BQ081301
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCA
EST: gi|7795347|gb|AW780806.1|AW780806
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGT-ACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|10847469|gb|BF070151.1|BF070151
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGAGCAGACAGAGCCAGCAACATATAACAATGCTCCTCTTATTGGTATTCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcatcattattcttgctttatgtccctctcgttaaaactcttgcagtgatgataatatactaatcagctttaatttcttccttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG