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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttcaaattaagtaacatgaaattggaagtatagtgacaatctaacaagtcaaagctttattccgtgcag

Basic information

species Glycine max
transcript GLYMA08G02550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02550.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g01220.t01 (Vitis vinifera), 5'ss of exon 7
AAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttcaaattaagtaacat---gaaatt----ggaagtatag-tgacaatctaacaagtcaa--agctttattccgtgcag
|||| ||  |||| ||||||||||||||  || | |||||  |    || ||||||||||||| |||||||||||| |||||||||||| || |||||||||  || ||||     |  |  |   |  |||    ||   | ||| | |  ||  || |||  ||      || |||  |||||
AAACCAAGGAGAATCGCCAGAAGAAGAAGAAGCAGAAGGAAAAGGCCAACTCTGATCCAAACAAGCCTAAGAAGCCGGCATCCTCATTCCTCCTATTCAGgtatatatcaatcagggatatttttcgggattttctggctttttagattatgattcaataaggaaattgttcttgttctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193641318|gb|FK588980.1|FK588980
EST:     ATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: ATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208189048|gb|GD986028.1|GD986028
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193630116|gb|FK581309.1|FK581309
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193411107|gb|FK377654.1|FK377654
EST:     AGAAGCCTGCATCCTCATTCATCTTACTCAG                         CGAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: AGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193601087|gb|FK553032.1|FK553032
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208282807|gb|GE076005.1|GE076005
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208266947|gb|GE062328.1|GE062328
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208248785|gb|GE046298.1|GE046298
EST:     TTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208163135|gb|GD964371.1|GD964371
EST:     CCTGCATCCTCATTCATCTTATTCAG                         A
genomic: CCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcag-
EST: gi|208163135|gb|GD964371.1|GD964371
EST:     CCTGCATCCTCATTCATCTTATTCAG                         A
genomic: CCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcag-
EST: gi|193705152|gb|FK644054.1|FK644054
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208096401|gb|GD893788.1|GD893788
EST:     ATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: ATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208320133|gb|GE122890.1|GE122890
EST:     CAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: CAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193368882|gb|FK335248.1|FK335248
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|207732761|gb|GD712218.1|GD712218
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAG-AGGAGCGACCAGGAATCGGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193547439|gb|FK501936.1|FK501936
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193482036|gb|FK447883.1|FK447883
EST:     TGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208147578|gb|GD951531.1|GD951531
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208302476|gb|GE098365.1|GE098365
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208090356|gb|GD887379.1|GD887379
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|207749297|gb|GD720883.1|GD720883
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208193441|gb|GD991556.1|GD991556
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193576538|gb|FK533677.1|FK533677
EST:     CATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: CATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208262987|gb|GE062449.1|GE062449
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208152661|gb|GD950914.1|GD950914
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208222115|gb|GE019951.1|GE019951
EST:     CTGATCCAAACAGGCCTAAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAAGAAGCAAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACC
genomic: CTGATCCAAACAGGCCT-AAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagC-AAAGAAGC-AAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACC
EST: gi|193693966|gb|FK629110.1|FK629110
EST:     ATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: ATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193321902|gb|FK287424.1|FK287424
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193529626|gb|FK484859.1|FK484859
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193581312|gb|FK533635.1|FK533635
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGAC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGAC
EST: gi|208162493|gb|GD963182.1|GD963182
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAG-AGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208197011|gb|GE001075.1|GE001075
EST:     CTGATCCAAACAGGCCTAAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: CTGATCCAAACAGGCCT-AAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208076405|gb|GD874326.1|GD874326
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193691235|gb|FK627490.1|FK627490
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208266456|gb|GE062761.1|GE062761
EST:     TTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|207684472|gb|GD665145.1|GD665145
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208173057|gb|GD967588.1|GD967588
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|208296750|gb|GE095674.1|GE095674
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAAGAAGCAAGGAAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAA-GAAGCAAGGAAAA-CTTTACAGGAGGAGCGACCAGGAATCAGCACC
EST: gi|193731262|gb|FK664850.1|FK664850
EST:     TTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193332214|gb|FK300296.1|FK300296
EST:     AAACAAGGCCTAAGAAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: AAAC-AGGCCTAAG-AAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193585137|gb|FK540706.1|FK540706
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|207821175|gb|GD792998.1|GD792998
EST:     CATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: CATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
EST: gi|193639347|gb|FK586134.1|FK586134
EST:     CCTCATTCATCTTTATTTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCT
genomic: CCTCATTCATC-TTA-TTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCT
EST: gi|208127020|gb|GD922596.1|GD922596
EST:     TCATTCATCTTTATTTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCT
genomic: TCATTCATC-TTA-TTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCT
EST: gi|208162323|gb|GD963096.1|GD963096
EST:     TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAG                         CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC
genomic: TCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttca ... ttccgtgcagCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGgtgaatttcaaattaagtaacatgaaattggaagtatagtgacaatctaacaagtcaaagctttattccgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC