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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAATgtaaaaatatatttttttcacatttttcccctaaagattattagtttttcagttgttcttgaacaatgaccatttaactatgttgcatacctgaag

Basic information

species Glycine max
transcript GLYMA08G01800.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782310|gb|GD752845.1|GD752845
EST:     GCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAAAT                         CAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAGAATAAA
genomic: GCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATG-AAAAATgtaaaaatat ... atacctgaagCAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAGAATAAA
EST: gi|193406321|gb|FK373516.1|FK373516
EST:     TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAAT                         CAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTAT
genomic: TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAATgtaaaaatat ... atacctgaagCAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTAT
EST: gi|208298630|gb|GE094153.1|GE094153
EST:     TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAACATGAAAAAT                         CAAAACAATCTTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAGAATAAAT
genomic: TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAATgtaaaaatat ... atacctgaagCAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAGAATAAAT
EST: gi|208194248|gb|GD994335.1|GD994335
EST:     TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAAT                         CAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAGAATAAAT
genomic: TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAATgtaaaaatat ... atacctgaagCAAAACCATCTTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAGAATAAAT
EST: gi|207811204|gb|GD783041.1|GD783041
EST:     TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAAT                         CAAAACCATCTTTTCAAGG
genomic: TGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAATgtaaaaatat ... atacctgaagCAAAACCATCTTTTCAAGG