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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCATTCACTCCACCTGAATATCTGAGGACAGgtaccccctcacaagatatatttttcatcacaaaatcatgttactcaatcttctatgcctgtgcttggagatcaaactttagtactgatgcttattaaga...

Basic information

species Glycine max
transcript GLYMA08G01730.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 6
AATCCTAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCATTCACTCCACCTGAATATCTGAGGACAGgtaccccctcacaagatatatttttcatcacaaaatcatgttactcaatcttctatgcctgtgcttggagatcaaact--ttagtactgatg--cttattaaga---
|| ||||||||||| || |||||||| ||||| || ||  | ||||| |||||||||||||| ||||||||||| || || || |||||  ||||||| |||              | | || ||| | |   |   ||  || |   | |  ||  | | |  |   || |  | ||  | | ||||| ||   || | | ||   
AACCCTAGACTTTCCTGTTTCGGTCTCATGAAGAACAGCCGGGATGGAAAAAGTTACAGTACCAATTTGGCATTTACGCCTCCAGAATACATGAGGACTGgtgggtttct------tgt-ttcttctttaatgacctatcctagtttgtttagtagccatttaatgttagtttgatctgataattactgctgaatttctgaggaact

upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 5
AATCCTAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCATTCACTCCACCTGAATATCTGAGGACAGgtaccccctcacaagatatatttttcatcacaaaatcatgttactcaatcttctatgcctgtgcttggag-atcaaactttagt----actgatgcttattaaga-------------------------------------------------------------------------------------------
||||| |||||||||||||| ||| |||||||||| ||||||||||| || ||||| || || ||  ||||||||||||| || || ||||||||||||||||     | |||| | || | |   |  ||   |||  ||   ||| |     |    | | || |||  |||||| |||  |    | | ||  || |  ||                                                                                            
AATCCAAGACTTTCATGCTTTGGTTTGATGAAAAACAGTAGAGATGGAAAGAGTTATAGCACTAACCTGGCATTCACTCCTCCCGAGTATCTGAGGACAGgtatattttgacaaaagat-tgtgcaaatacctcatcgagtctttcactacctaaattgtttcctgggattatcaaaattttcttgcaatttataattttccagctgacagctaaggtttcatgaaaacatgaatgctttatttggattgtggctgcttttctgttttttattgggttatgtgtttatttctacag

upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 5
AATCCTAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCATTCACTCCACCTGAATATCTGAGGACAGgtaccccctcacaagatatatttttcatcacaaaatcatgttactca-atcttctatgcctgtgcttggagatcaaactttagtactgatgcttattaaga
||||| |||||||||||||||||||||||||||||||||||||| || || ||||| || || ||  |||| |||||||| || || ||||| || |||||||    ||       |  | | ||    |  |  |  | ||| |   ||  |   |   | |  |  || ||   | ||| ||     || || |  || 
AATCCAAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGACGGAAAGAGTTATAGCACCAACCTGGCGTTCACTCCTCCAGAGTATCTCAGAACAGgtatatact-------tgaactcttgcatattagtttttattatttggattgtagctagttttcttctgacatattagttt-gtgtgtttgtttctacag-

upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 7
AATCCTAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCATTCACTCCACCTGAATATCTGAGGACAGgtaccc--cctcacaagatatatttttcatcacaaaatcatgttactcaatcttctatgcctgtgct-tggagatcaaact-ttagtactgatgcttattaaga
 ||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||| || ||||| || || || || || ||||||||||||||||| ||||      |||||  |    | | |   || |    |  | ||  |   || ||| |||  |  |  |  ||||  ||   || ||| || ||  ||||    
GATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGATGGAAAAAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttctcacttgccccactgtatctctcttgttt-tttttttgcttcgtctctgctagctcgatatagatggaatcattggtaatgctgtctattg---