1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttctcaaatttccaactttttattcttgtattagaattagataagtttaagtttttgcagtttaatttaggttctcttgtacctttgtgaccaa...
species | Glycine max |
transcript | GLYMA07G40240.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAG ATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATEST: gi|151393165|gb|EV263040.1|EV263040
genomic: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttct ... ttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
EST: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAG ATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATEST: gi|192334367|gb|FK025544.1|FK025544
genomic: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttct ... ttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
EST: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAG ATTGGNNNNNNNNNNGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
genomic: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttct ... ttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttctcaaatttccaactttttattcttgtattagaattagataagtttaagtttttgcagtttaatttaggttctcttgtacctttgtgaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG