Sequence
atgc intronic sequence ATGC exonic sequenceCCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGgtgccatgtttgtttattatcagtaatcagtaatcttagtactctgaagtgtgtgtgtgggtgtgttatactgtcatctgagtaatgttaaaatttcactacag
Basic information
species | Glycine max |
transcript | GLYMA07G40230.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G40230.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 7
CCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGgtgccatgtttgtttattatcagtaatcagtaatcttagtactctgaagtgtgtgtgtgggtgtgttatactgtcatctgagtaatgttaaaatttcactacag
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CCGTTTTGGGCCACACCTTGCTGAAGCTGTTCCTTTGCTCATAAACTATTGTACAAGTGCATCGGAAAATGATGAAGAGCTCCGTGAATACAGCTTGCAGgtgaacaattttcttctttccaatgttacatgaaacgagtgttctcttgtatgactcctg-tgggtttttccataatgtag-----------------------
upper sequence: GLYMA07G40230.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G168629_T05 (Zea mays), 5'ss of exon 7
CCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGgtgccatgtttgtttattatcagtaatcagtaatcttagtactctgaagtgtgtgtgtgggtgtgttatactgtcatctgagtaatgttaaaatttcactacag
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CCGTTTTGGGCCACACCTTGCTGAAACTGTTCCTTTGCTTATAAGCTATTGTACAAGTGCATCTGAAAATGATGAAGAGCTCCGTGAATACAGCTTGCAGgtgtga-atctgttttgatttaatattt-----tttttgta-tctgtgttctttgaattagctctaaaatctttctgccatatag-------------------
upper sequence: GLYMA07G40230.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 8
CCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGgtgccatgtttgt------ttattatcagtaatcagt---aatcttagt--actctgaagtgtgtgtgtgggtgtg----ttatactgtcatctg--agtaatgttaaaatttcactacag
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CCGTTTTGGATCTCATCTTGGAGATACTGTTCCTGTGCTAATTAATTACTGCACAAGTGCATCAGAGAATGATGAAGAGCTTCGAGAATATAGCTTGCAGgtattgtgtatatgaaattttactttagatatttattttgatgtttagtttaccttgcaccctttatgttatggtaaaattgacttcttcatatgttacatatgcgtaaattttaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193368973|gb|FK338433.1|FK338433EST: GTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAG GCACTGGAAAGCTTTCTCCTTAGGTGTCCAAGGGATATTTCTGTTTACTGT
genomic: GTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGgtgccatgtt ... ttcactacagGCACTGGAAAGCTTTCTCCTTAGGTGTCCAAGGGATATTTCTGTTTACTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGgtgccatgtttgtttattatcagtaatcagtaatcttagtactctgaagtgtgtgtgtgggtgtgttatactgtcatctgagtaatgttaaaatttcactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT