1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGgtgtgattatgattcctgcctatatcaaaacgttgataacttatgcagtgatgttgatttgattttcaattaacactttttgtacatgcag
species | Glycine max |
transcript | GLYMA07G39870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG GTTGAAGTTTCCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGAEST: gi|27427305|gb|CA938825.1|CA938825
genomic: GAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGgtgtgattat ... gtacatgcagGTTGAAGTTT-CCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGA
EST: GAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG GTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATEST: gi|254317259|gb|GR826204.1|GR826204
genomic: GAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGgtgtgattat ... gtacatgcagGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGAT
EST: GAGGAATATCTGCTCAAAATGCTG-TCATTTTGCTTGGGAGATAGTTCCG GTTGAAGTTTCCACT
genomic: GAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGgtgtgattat ... gtacatgcagGTTGAAGTTTCCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGgtgtgattatgattcctgcctatatcaaaacgttgataacttatgcagtgatgttgatttgattttcaattaacactttttgtacatgcag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT